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To use the IGB (Integrated Genome Browser) links, first launch IGB. Visit the Plant IGB Start page and click a Launch IGB button. To view data used in this study, click the "Data Access" tab. Then, select genome "Arabidopsis_thaliana" and click the ATH1 and TAIRv6 checkboxes. To view one of the genes below, click the IGB link and IGB should scroll and zoom to the requested region.
| gene | probe sets | links | Ave tr len | Rsquared | p | r | notes | |
|---|---|---|---|---|---|---|---|---|
| 1 | AT5G04440 |
250886_at
250887_at |
IGB: chr5:1254848-1257054 | 1.11e+03 | 0.0598 | 0.0903 | -0.245 | Full cDNA support, but probe sets are on opposite strands. |
| 2 | AT3G09410 |
259033_at
259034_at |
IGB: chr3:2894914-2901106 | 1.55e+03 | 0.0427 | 4.66e-06 | -0.207 | Two gene models have the same gene id, but do not overlap. |
| 3 | AT1G55310 |
259666_at
259648_at |
IGB: chr1:20633631-20636664 | 1.11e+03 | 0.00844 | 0.123 | -0.0919 | Nearly full cDNA support, but probe sets are on opposite strands. |
| 4 | AT4G12640 |
254825_at
254826_at |
IGB: chr4:7462497-7467959 | 2.8e+03 | 0.00669 | 0.312 | 0.0818 | No cDNA support for full gene model and probe sets interrogate exons separated by a large intron. Good candidate for split. |
| 5 | AT3G09470 |
258705_at
258699_at |
IGB: chr3:2910278-2914606 | 1.67e+03 | 0.0111 | 0.135 | 0.105 | cDNA support for larger, 3-prime extended gene model. Discordance may be due to differential regulation of alternative polyadenylation/transcriptional stop site choice. |
| 6 | AT3G50590 |
252162_at
252171_at |
IGB: chr3:18781899-18790583 | 5.21e+03 | 0.0283 | 0.00886 | 0.168 | No cDNA support for full gene model. Good candidate for split. |
| 7 | AT5G35980 |
249679_at
249678_at |
IGB: chr5:14145113-14153654 | 3.4e+03 | 0.0305 | 0.000131 | 0.175 | Full cDNA support for larger 3-prime extended variant. Discordance may be due to differential regulation of alternative polyadenylation/transcriptional stop site choice. 249678_at would detect both variants, but 249679_at would detect only the larger 3-prime extended variant. |
| 8 | AT2G37840 |
266080_at
266081_at |
IGB: chr2:15858780-15863479 | 2.77e+03 | 0.0327 | 0.000205 | 0.181 | Full cDNA support for one variant (AT2G37840.1), partial cDNA support for theother variant (AT2G37840.2). Variant .2 could be a candidate for early transcriptional termination relative to the other. Both probe sets would detect each variant, provided the gene models are accurate. If variant .2 terminates early, 266080_AT would not detect it. |
| 9 | AT3G52640 |
252062_at
252028_at |
IGB: chr3:19525752-19531622 | 2.55e+03 | 0.0803 | 3.67e-10 | 0.283 | No cDNA support for full gene model. Variants differ in 3-prime exons, but probe sets would detect all. |
| 10 | AT4G11830 |
254846_at
254893_at |
IGB: chr4:7115629-7121339 | 3.84e+03 | 0.0997 | 7.93e-11 | 0.316 | Full cDNA support for one variant AT4G11830.1. Variants differ in 5-prime exons 2 and 3. Retainined intron in variant AT4G11830.2 merges exons 2 and 3. Probe sets would detect all known variants. |
| 11 | AT5G24710 |
246960_at
246961_at |
IGB: chr5:8459050-8468276 | 4.48e+03 | 0.108 | 1.52e-07 | 0.329 | No cDNA support for full model. No variants. Good split candidate. |
| 12 | AT5G53480 |
248272_at
248268_at |
IGB: chr5:21730491-21735108 | 3.81e+03 | 0.117 | 1.75e-14 | 0.343 | cDNA support for full model. No variants. |
| 13 | AT4G01290 |
255616_at
255615_at |
IGB: chr4:537996-543969 | 3.68e+03 | 0.128 | 4.08e-14 | 0.357 | no cDNA support for full model. No variants, but there is an adjacent gene upstream interrogated by probe set 255623_at. Should check for correlation with this probe set, since it may be a part of this transcriptional unit. |
| 14 | AT3G18930 |
256917_at
256948_at |
IGB: chr3:6523380-6525649 | 1.94e+03 | 0.136 | 0.00289 | 0.369 | -- |
| 15 | AT4G33180 |
253367_at
253366_at |
IGB: chr4:16000143-16002372 | 1.18e+03 | 0.144 | 1.63e-07 | 0.379 | -- |
| 16 | AT4G33520 |
253339_at
253342_at |
IGB: chr4:16118798-16126253 | 2.52e+03 | 0.16 | 4.01e-19 | 0.4 | -- |
| 17 | AT5G46470 |
248875_at
248845_at |
IGB: chr5:18859827-18867068 | 4.85e+03 | 0.166 | 1.06e-09 | 0.407 | -- |
| 18 | AT2G01220 |
265793_at
265760_at |
IGB: chr2:123174-126526 | 1.39e+03 | 0.168 | 5.43e-21 | 0.41 | -- |
| 19 | AT4G16980 |
245459_at
245318_at |
IGB: chr4:9556896-9557931 | 835 | 0.174 | 2.31e-09 | 0.417 | -- |
| 20 | AT3G22620 |
256937_at
256929_at |
IGB: chr3:8008440-8010124 | 1.3e+03 | 0.177 | 0.000399 | 0.42 | -- |
| 21 | AT1G31710 |
246601_at
246602_at |
IGB: chr1:11349720-11355567 | 2.21e+03 | 0.185 | 8.63e-06 | 0.431 | -- |
| 22 | AT1G11130 |
262479_at
262451_at |
IGB: chr1:3722756-3727543 | 2.85e+03 | 0.193 | 2.48e-19 | 0.44 | -- |
| 23 | AT5G14620 |
250140_at
250139_at |
IGB: chr5:4715155-4718807 | 2.18e+03 | 0.215 | 1.78e-22 | 0.463 | -- |
| 24 | AT1G77080 |
264945_at
264949_at |
IGB: chr1:28960430-28965091 | 854 | 0.22 | 1.32e-12 | 0.469 | -- |
| 25 | AT2G25760 |
266652_at
266651_at |
IGB: chr2:10991785-10996102 | 2.61e+03 | 0.223 | 6.03e-26 | 0.472 | -- |
| 26 | AT2G32560 |
267117_at
267116_at |
IGB: chr2:13831770-13834163 | 1.37e+03 | 0.224 | 6.56e-07 | 0.473 | -- |
| 27 | AT2G17410 |
264876_at
264878_at |
IGB: chr2:7565979-7570934 | 2.82e+03 | 0.25 | 1.28e-26 | 0.5 | -- |
| 28 | AT4G05050 |
255257_at
AFFX-Athal-Ubq_5_f_at |
IGB: chr4:2587901-2589460 | 1.08e+03 | 0.258 | 1.3e-32 | 0.508 | -- |
| 29 | AT3G17880 |
258219_at
258187_at |
IGB: chr3:6123351-6126376 | 1.39e+03 | 0.267 | 8.59e-30 | 0.517 | -- |
| 30 | AT2G46020 |
266909_at
266605_at |
IGB: chr2:18930276-18938942 | 6.58e+03 | 0.276 | 0.0012 | 0.525 | -- |
| 31 | AT4G38600 |
252947_at
252948_at |
IGB: chr4:18040924-18049386 | 6.05e+03 | 0.283 | 2.23e-11 | 0.532 | -- |
| 32 | AT5G35430 |
249723_at
249722_at |
IGB: chr5:13679070-13683345 | 2.78e+03 | 0.285 | 2.01e-21 | 0.534 | -- |
| 33 | AT3G03380 |
259047_at
259048_at |
IGB: chr3:799521-808629 | 3.6e+03 | 0.297 | 1.81e-37 | 0.545 | -- |
| 34 | AT3G54380 |
251893_at
251894_at |
IGB: chr3:20144771-20147869 | 1.36e+03 | 0.315 | 1.35e-32 | 0.561 | -- |
| 35 | AT1G26300 |
245870_at
245872_at |
IGB: chr1:9095786-9099841 | 956 | 0.316 | 3.9e-14 | 0.562 | -- |
| 36 | AT5G13030 |
250275_at
250276_at |
IGB: chr5:4133118-4137021 | 2.36e+03 | 0.34 | 1.1e-43 | 0.583 | -- |
| 37 | AT5G63200 |
247364_at
247363_at |
IGB: chr5:25366136-25370328 | 2.08e+03 | 0.341 | 1.06e-05 | 0.584 | -- |
| 38 | AT3G54320 |
251892_at
251891_at |
IGB: chr3:20125607-20129717 | 1.48e+03 | 0.351 | 8.8e-05 | 0.593 | -- |
| 39 | AT2G07360 |
265779_at
265778_at |
IGB: chr2:3047202-3057274 | 3.99e+03 | 0.371 | 7.64e-34 | 0.609 | -- |
| 40 | AT2G02410 |
266204_at
266173_at |
IGB: chr2:632538-634931 | 1.22e+03 | 0.374 | 6.53e-10 | 0.611 | -- |
| 41 | AT2G39140 |
267018_at
267017_at |
IGB: chr2:16337160-16340538 | 1.5e+03 | 0.387 | 3.34e-42 | 0.622 | -- |
| 42 | AT3G53670 |
251954_at
251953_at |
IGB: chr3:19901298-19903480 | 1.4e+03 | 0.406 | 3.25e-54 | 0.637 | -- |
| 43 | AT2G43160 |
266436_at
266437_at |
IGB: chr2:17955038-17960898 | 3.32e+03 | 0.42 | 5.04e-44 | 0.648 | -- |
| 44 | AT3G06810 |
258524_at
258525_at |
IGB: chr3:2146297-2150937 | 2.79e+03 | 0.423 | 0.000325 | 0.65 | -- |
| 45 | AT2G46340 |
263779_at
263780_at |
IGB: chr2:19029316-19034540 | 3.58e+03 | 0.428 | 1.18e-25 | 0.654 | -- |
| 46 | AT1G21830 |
262488_at
262489_at |
IGB: chr1:7661048-7662695 | 975 | 0.431 | 2.23e-59 | 0.656 | -- |
| 47 | AT5G62000 |
247468_at
247508_at |
IGB: chr5:24927483-24932531 | 3.43e+03 | 0.443 | 3.33e-55 | 0.666 | -- |
| 48 | AT2G35450 |
266620_at
266621_at |
IGB: chr2:14910023-14912551 | 1.21e+03 | 0.445 | 1.5e-33 | 0.667 | -- |
| 49 | AT5G56180 |
247997_at
248002_at |
IGB: chr5:22754450-22758342 | 1.73e+03 | 0.458 | 1.04e-39 | 0.677 | -- |
| 50 | AT2G34555 |
266907_at
266952_at |
IGB: chr2:14563966-14565876 | 1.14e+03 | 0.473 | 9.69e-06 | 0.688 | -- |
| 51 | AT2G39080 |
266192_at
266193_at |
IGB: chr2:16316806-16319687 | 1.24e+03 | 0.479 | 4.36e-70 | 0.692 | -- |
| 52 | AT1G10090 |
264515_at
264516_at |
IGB: chr1:3289958-3296281 | 3.14e+03 | 0.482 | 2.27e-27 | 0.694 | -- |
| 53 | AT1G63900 |
260322_at
260321_at |
IGB: chr1:23720281-23723023 | 1.54e+03 | 0.487 | 1.08e-39 | 0.698 | -- |
| 54 | AT1G09660 |
264664_at
264665_at |
IGB: chr1:3127672-3131174 | 1.38e+03 | 0.504 | 3.74e-72 | 0.71 | -- |
| 55 | AT3G19720 |
257044_at
257045_at |
IGB: chr3:6850276-6855619 | 2.62e+03 | 0.514 | 1.53e-47 | 0.717 | -- |
| 56 | AT1G01320 |
261054_at
261053_at |
IGB: chr1:121033-130199 | 5.76e+03 | 0.548 | 2.17e-59 | 0.74 | -- |
| 57 | AT1G02205 |
264146_at
264147_at |
IGB: chr1:418677-422538 | 2.24e+03 | 0.549 | 1.84e-37 | 0.741 | -- |
| 58 | AT2G44950 |
266817_at
266818_at |
IGB: chr2:18549268-18555766 | 3.29e+03 | 0.551 | 7.13e-15 | 0.743 | -- |
| 59 | AT2G31010 |
267201_at
267200_at |
IGB: chr2:13201187-13207305 | 3.02e+03 | 0.552 | 2.92e-15 | 0.743 | -- |
| 60 | AT3G12800 |
257686_at
257687_at |
IGB: chr3:4063230-4064895 | 1.07e+03 | 0.561 | 1.1e-85 | 0.749 | -- |
| 61 | AT5G24690 |
246959_at
246958_at |
IGB: chr5:8455359-8458841 | 2.12e+03 | 0.564 | 3.01e-80 | 0.751 | -- |
| 62 | AT2G28540 |
264076_at
264081_at |
IGB: chr2:12225059-12231005 | 2.71e+03 | 0.567 | 1.78e-17 | 0.753 | -- |
| 63 | AT3G16857 |
256790_at
257649_at |
IGB: chr3:5755829-5759476 | 2.42e+03 | 0.574 | 4.13e-09 | 0.757 | -- |
| 64 | AT5G60410 |
247630_at
247629_at |
IGB: chr5:24312015-24318472 | 3.17e+03 | 0.586 | 5.4e-08 | 0.765 | -- |
| 65 | AT4G09900 |
255026_at
255025_at |
IGB: chr4:6221560-6224230 | 1.36e+03 | 0.589 | 2.05e-67 | 0.767 | -- |
| 66 | AT2G20740 |
265427_at
265426_at |
IGB: chr2:8942587-8944691 | 883 | 0.597 | 2.26e-95 | 0.773 | -- |
| 67 | AT5G63420 |
247385_at
247386_at |
IGB: chr5:25417511-25423294 | 3.03e+03 | 0.599 | 1.81e-67 | 0.774 | -- |
| 68 | AT1G08680 |
264795_at
264796_at |
IGB: chr1:2762508-2769070 | 2.68e+03 | 0.62 | 1.38e-05 | 0.787 | -- |
| 69 | AT2G37480 |
265953_at
265952_at |
IGB: chr2:15744860-15747026 | 1.41e+03 | 0.625 | 1.5e-104 | 0.791 | -- |
| 70 | AT1G56500 |
259603_at
259633_at |
IGB: chr1:21163308-21171086 | 3.43e+03 | 0.672 | 1.96e-109 | 0.82 | -- |
| 71 | AT4G00400 |
255692_at
255662_at |
IGB: chr4:173971-176937 | 1.85e+03 | 0.677 | 4.6e-103 | 0.823 | -- |
| 72 | AT3G18000 |
258217_at
258218_at |
IGB: chr3:6154268-6157658 | 1.91e+03 | 0.677 | 1.68e-87 | 0.823 | -- |
| 73 | AT1G51110 |
245744_at
245745_at |
IGB: chr1:18938915-18941427 | 1.44e+03 | 0.689 | 3.44e-98 | 0.83 | -- |
| 74 | AT3G17970 |
258215_at
258214_at |
IGB: chr3:6147867-6152081 | 2.02e+03 | 0.702 | 9.18e-104 | 0.838 | -- |
| 75 | AT3G09600 |
258723_at
258724_at |
IGB: chr3:2946319-2949100 | 1.14e+03 | 0.713 | 2.87e-58 | 0.844 | -- |
| 76 | AT5G39785 |
249423_at
249418_at |
IGB: chr5:15946315-15949604 | 1.95e+03 | 0.722 | 1.78e-61 | 0.85 | -- |
| 77 | AT5G14180 |
250219_at
250199_at |
IGB: chr5:4571240-4574564 | 1.41e+03 | 0.724 | 2.51e-11 | 0.851 | -- |
| 78 | AT3G48570 |
252324_at
252328_at |
IGB: chr3:18014797-18016059 | 490 | 0.751 | 2.34e-146 | 0.867 | -- |
| 79 | AT2G30600 |
267524_at
267523_at |
IGB: chr2:13043852-13048861 | 2.71e+03 | 0.767 | 6.67e-134 | 0.876 | -- |
| 80 | AT2G03390 |
265706_at
265707_at |
IGB: chr2:1030298-1032719 | 1.36e+03 | 0.776 | 1.46e-156 | 0.881 | -- |
| 81 | AT5G44820 |
249021_at
254521_at |
IGB: chr5:18112839-18114912 | 1.21e+03 | 0.795 | 5.33e-81 | 0.891 | -- |
| 82 | AT2G07340 |
265777_at
265776_at |
IGB: chr2:3045455-3046816 | 584 | 0.807 | 3.91e-174 | 0.899 | -- |
| 83 | AT2G30520 |
267516_at
267517_at |
IGB: chr2:13009718-13012772 | 2.08e+03 | 0.817 | 6.49e-165 | 0.904 | -- |
| 84 | AT4G20130 |
254501_at
254502_at |
IGB: chr4:10878815-10882039 | 1.69e+03 | 0.819 | 1.44e-167 | 0.905 | -- |
| 85 | AT3G26980 |
257784_at
257785_at |
IGB: chr3:9947302-9949377 | 985 | 0.85 | 2.45e-196 | 0.922 | -- |
| 86 | AT5G62440 |
247454_at
247453_at |
IGB: chr5:25089608-25091315 | 818 | 0.857 | 9.09e-206 | 0.925 | -- |
| 87 | AT1G65390 |
264153_at
264213_at |
IGB: chr1:24296052-24298393 | 1.32e+03 | 0.91 | 3.51e-44 | 0.954 | -- |