Supplementary Files
2006
Cui X, Loraine A. Global Correlation Analysis Between Redundant Probe Sets Using a Large Collection of
Arabidopsis ATH1 Expression Profiling Data. Proc. LSS Comp. Systems Bioinf. 2006, p. 223-226.
PDF
| Supplementary File 1. | Scatter plots, regression results, and Pearson's r comparing expression values from pairs of redundant probe sets that are annotated as interrogating different regions of the same gene. |
| Supplementary File 2. | Transcripts lengths are (approximately) log-normally distributed in Arabidopsis. |
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Supplementary File 3. IGB Links |
Web page listing redundant probe sets, with links to TAIR gene pages, Affymetrix ATH1 probe set pages, Integrated Genome Browser links, and notes on possible gene model corrections for genes with poorly-correlated probe sets. |
| Supplementary File 4. | Column 2 gives the number of PA calls (MAS5) that differed between redundant probe sets annotated as measuring the gene listed in column 1. |
Probe set-to-AGI mappings are from data provided by The Arabidopsis Information Resource.