PCL results for AraCyc pathway: tRNA charging pathway

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank

probe set:gene id

co-expressed with

259344_at : AT3G03710
GO:0004549:tRNA-specific ribonuclease activity
GO:0000049:tRNA binding
GO:0008033:tRNA processing
GO:0005840:ribosome
GO:0000175:3'-5'-exoribonuclease activity
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0003676:nucleic acid binding
GO:0006412:protein biosynthesis
GO:0006396:RNA processing
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.522	6.85e-132	0.709	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.62	5.11e-162	0.782	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.53	7.45e-117	0.664	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.712	1.76e-132	0.711	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.666	2.1e-119	0.673	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.756	9.29e-129	0.7	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.54	3.62e-121	0.678	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.48	7.59e-104	0.62	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.575	1.09e-133	0.714	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.856	4.78e-186	0.826	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.681	1.19e-140	0.732	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.538	3.71e-138	0.726	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.591	7.66e-122	0.68	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.795	3.81e-116	0.662	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

257717_at : AT3G18390
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.363	1.76e-133	0.714	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.434	9.64e-171	0.799	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.356	2.94e-105	0.625	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.522	5.22e-169	0.796	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.487	5.29e-148	0.75	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.502	2.92e-110	0.643	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.358	7.34e-104	0.62	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.334	1.46e-105	0.626	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.39	4.34e-124	0.687	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.597	3.89e-194	0.839	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.47	4.02e-139	0.728	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.375	1.49e-141	0.735	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.46	1.99e-209	0.861	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.563	1.37e-126	0.694	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

262086_at : AT1G56050
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.434	1.62e-106	0.63	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.55	8.05e-167	0.791	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.484	5.22e-134	0.715	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.648	4.38e-151	0.758	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.615	3.64e-143	0.739	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.651	5.82e-118	0.668	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.478	2.57e-123	0.684	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.422	3.4e-103	0.618	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.542	1.69e-180	0.817	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.758	1.76e-190	0.833	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.604	1.43e-144	0.742	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.478	2.31e-142	0.737	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.54	6.13e-140	0.731	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.706	2e-119	0.673	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

255447_at : AT4G02790
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.435	1.44e-111	0.647	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.524	2.66e-140	0.732	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.476	9.75e-130	0.703	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.651	7.94e-161	0.779	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.634	2.75e-171	0.8	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.631	1.98e-109	0.64	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.446	7.01e-100	0.606	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.42	1.32e-104	0.623	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.478	4.38e-112	0.649	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.71	1.82e-146	0.747	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.601	4.72e-147	0.748	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.471	6.96e-139	0.728	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.56	1.87e-172	0.802	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.732	4.78e-143	0.738	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

251193_at : AT3G62910
GO:0005737:cytoplasm
GO:0016149:translation release factor activity, codon specific
GO:0009658:chloroplast organization and biogenesis
GO:0006415:translational termination
GO:0003747:translation release factor activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.416	1.47e-99	0.605	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.515	1.74e-137	0.724	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.487	8.52e-150	0.755	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.673	2.13e-202	0.851	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.638	1.33e-186	0.827	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.634	9.02e-116	0.661	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.461	3.41e-116	0.662	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.418	8.5e-107	0.631	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.499	6.19e-137	0.723	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.722	5.9e-166	0.79	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.626	9.55e-188	0.829	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.484	2.15e-164	0.786	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.548	4.21e-164	0.786	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.717	2.18e-137	0.724	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

261540_at : AT1G63610
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.488	7.45e-99	0.602	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.607	4.8e-139	0.728	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.554	1.23e-130	0.706	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.775	3.22e-181	0.818	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.753	5.26e-192	0.836	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.718	5.16e-102	0.614	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.524	1.47e-103	0.619	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.499	6.89e-113	0.652	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.597	1.21e-146	0.747	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.851	7.95e-168	0.793	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.715	8.8e-163	0.783	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.574	3.08e-172	0.802	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.643	2.27e-162	0.782	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.835	1.99e-132	0.711	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

245150_at : AT2G47590
GO:0003913:DNA photolyase activity
GO:0008372:cellular component unknown
GO:0006281:DNA repair

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.471	8.94e-97	0.594	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.624	2.99e-179	0.815	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.521	7.42e-116	0.661	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.745	2.61e-172	0.802	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.674	3.97e-132	0.71	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.687	5.16e-97	0.595	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.509	3.07e-104	0.622	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.472	6.2e-103	0.617	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.582	1.23e-149	0.754	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.865	9.23e-216	0.869	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.696	1.05e-165	0.789	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.538	4.3e-146	0.746	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.62	2.1e-157	0.772	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.802	1.29e-126	0.694	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

247098_at : AT5G66470
GO:0016151:nickel ion binding
GO:0007264:small GTPase mediated signal transduction
GO:0006461:protein complex assembly
GO:0003924:GTPase activity
GO:0003676:nucleic acid binding
GO:0006400:tRNA modification
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0005524:ATP binding
GO:0005525:GTP binding

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.455	4.6e-95	0.587	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.577	5.37e-143	0.738	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.534	9.61e-142	0.735	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.742	5.35e-196	0.842	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.666	2.74e-141	0.734	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.722	2.95e-127	0.696	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.486	6.14e-98	0.598	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.478	5.01e-119	0.671	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.557	8.71e-140	0.73	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.824	8.57e-192	0.835	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.678	2.48e-167	0.792	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.516	2.45e-138	0.726	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.593	3.95e-146	0.746	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.769	2.13e-120	0.676	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

255465_at : AT4G02990
GO:0017068:glutamyl-tRNA(Gln) amidotransferase activity
GO:0006412:protein biosynthesis
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.585	4.23e-95	0.587	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.715	3.15e-123	0.684	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.682	4.33e-138	0.726	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.889	8.36e-140	0.73	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.872	1.33e-152	0.761	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.941	1e-133	0.714	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.62	1.53e-95	0.589	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.577	2.86e-96	0.592	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.673	6.19e-111	0.645	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.97	1.11e-128	0.7	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.827	6.17e-133	0.712	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.663	4.96e-138	0.726	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.72	2.53e-117	0.666	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.989	1.06e-120	0.677	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

261882_at : AT1G80770
GO:0006400:tRNA modification
GO:0005525:GTP binding
GO:0003924:GTPase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.607	4.29e-108	0.635	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.716	1.12e-124	0.689	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.638	1.12e-108	0.637	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.867	1.15e-127	0.697	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.806	3.42e-113	0.653	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.91	7.38e-119	0.671	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.618	6.17e-95	0.587	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.613	1.35e-118	0.67	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.678	1.95e-114	0.657	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	1.02	2.92e-163	0.784	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.823	3.55e-131	0.707	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.654	9.18e-132	0.709	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.743	2.12e-132	0.711	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	1	3.92e-128	0.699	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

248075_at : AT5G55740
GO:0006259:DNA metabolism
GO:0004527:exonuclease activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.431	1.74e-96	0.593	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.582	4.59e-198	0.845	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.48	3.01e-118	0.669	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.689	3.73e-180	0.816	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.634	6.55e-147	0.748	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.649	1.52e-107	0.633	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.478	3.73e-113	0.652	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.42	4.69e-94	0.583	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.523	1.09e-137	0.725	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.776	3.29e-191	0.835	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.643	5.79e-172	0.801	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.488	7.99e-141	0.733	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.563	1.08e-151	0.759	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.742	6.47e-132	0.709	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

261206_at : AT1G12800
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.345	1.52e-93	0.581	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.457	2.52e-168	0.794	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.382	3.6e-111	0.646	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.56	1.75e-184	0.824	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.518	7.52e-153	0.762	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.51	2.41e-97	0.596	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.374	5.45e-101	0.61	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.367	4.06e-122	0.681	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.415	4.99e-128	0.698	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.634	2.23e-200	0.848	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.512	7.39e-159	0.775	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.39	2.05e-133	0.713	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.48	5.31e-196	0.842	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.587	5.85e-121	0.677	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

250739_at : AT5G05740
GO:0004222:metalloendopeptidase activity
GO:0016020:membrane
GO:0008270:zinc ion binding
GO:0006508:proteolysis and peptidolysis
GO:0008237:metallopeptidase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.371	3.81e-94	0.584	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.485	6.05e-162	0.781	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.414	2.09e-116	0.663	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.619	4.93e-223	0.878	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.541	5.59e-138	0.726	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.537	3.4e-92	0.576	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.407	3.82e-106	0.629	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.366	1.5e-95	0.589	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.456	2.11e-141	0.734	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.684	1.01e-210	0.863	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.563	1.18e-180	0.817	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.426	4.08e-144	0.741	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.505	1.14e-176	0.81	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.614	4.7e-111	0.645	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

250006_at : AT5G18660
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.259	3.49e-106	0.629	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.329	3.66e-166	0.79	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.273	9.47e-109	0.638	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.393	1.61e-161	0.781	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.366	7.33e-140	0.73	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.365	1.22e-94	0.586	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.262	2.58e-92	0.576	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.244	1.53e-92	0.577	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.304	6.78e-136	0.72	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.444	2.66e-171	0.8	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.355	1.79e-134	0.716	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.264	1.26e-106	0.63	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.332	1.72e-157	0.772	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.405	3.73e-103	0.618	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

260125_at : AT1G36390
GO:0000774:adenyl-nucleotide exchange factor activity
GO:0042803:protein homodimerization activity
GO:0006457:protein folding
GO:0051087:chaperone binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.497	1.89e-101	0.612	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.651	3.87e-183	0.821	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.54	6.78e-115	0.658	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.782	1.16e-180	0.817	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.745	2.74e-172	0.802	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.705	4.5e-93	0.579	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.518	4.92e-97	0.595	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.471	1.27e-90	0.569	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.604	5.11e-148	0.751	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.87	5.59e-179	0.814	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.691	3.68e-135	0.718	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.545	8.77e-132	0.709	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.655	1.04e-169	0.797	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.81	4.83e-114	0.655	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

256678_at : AT3G52380
GO:0006397:mRNA processing
GO:0003723:RNA binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.386	4.58e-94	0.583	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.508	3.05e-165	0.788	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.416	4.3e-103	0.618	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.616	4.83e-171	0.8	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.569	1.87e-143	0.739	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.556	1.36e-90	0.569	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.413	4.31e-97	0.595	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.386	2.33e-99	0.604	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.484	4.55e-153	0.762	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.688	3.12e-173	0.804	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.56	3.27e-145	0.744	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.433	1.16e-130	0.706	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.527	3.91e-179	0.814	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.64	4.67e-111	0.645	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

246040_at : AT5G19370
GO:0000004:biological process unknown
GO:0016853:isomerase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.737	3.62e-101	0.611	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.91	7.63e-139	0.728	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.8	7.17e-114	0.655	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	1.12	7.16e-151	0.757	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	1.11	2.34e-174	0.806	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	1.1	1.81e-109	0.64	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.768	1.34e-96	0.593	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.699	1.62e-90	0.569	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.866	1.14e-128	0.7	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	1.18	4.51e-123	0.684	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	1.02	7.53e-135	0.717	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.849	2.74e-161	0.78	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.948	6.38e-151	0.757	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	1.26	2.24e-137	0.724	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

249993_at : AT5G18570
GO:0008121:ubiquinol-cytochrome-c reductase activity
GO:0006122:mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005524:ATP binding
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0006118:electron transport
GO:0005525:GTP binding

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.553	7.13e-104	0.62	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.701	8.51e-160	0.777	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.663	9.71e-177	0.81	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.853	5.18e-168	0.794	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.799	3.28e-149	0.753	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.846	1.23e-122	0.682	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.626	2.06e-132	0.711	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.518	4.82e-89	0.563	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.669	5.57e-149	0.753	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.978	1.49e-194	0.84	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.817	2.62e-183	0.822	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.617	3.45e-144	0.741	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.685	1.79e-132	0.711	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.953	2.15e-144	0.742	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

258048_at : AT3G16290
GO:0005786:signal recognition particle (sensu Eukaryota)
GO:0004176:ATP-dependent peptidase activity
GO:0009378:Holliday junction helicase activity
GO:0004252:serine-type endopeptidase activity
GO:0009377:HslUV protease activity
GO:0009376:HslUV protease complex
GO:0007160:cell-matrix adhesion
GO:0016887:ATPase activity
GO:0003677:DNA binding
GO:0000103:sulfate assimilation
GO:0008237:metallopeptidase activity
GO:0005737:cytoplasm
GO:0005634:nucleus
GO:0016020:membrane
GO:0006510:ATP-dependent proteolysis
GO:0006508:proteolysis and peptidolysis
GO:0005524:ATP binding
GO:0005525:GTP binding
GO:0016787:hydrolase activity
GO:0004222:metalloendopeptidase activity
GO:0006281:DNA repair
GO:0016301:kinase activity
GO:0006614:SRP-dependent cotranslational protein-membrane targeting
GO:0008305:integrin complex
GO:0030163:protein catabolism
GO:0007155:cell adhesion
GO:0009507:chloroplast
GO:0006310:DNA recombination
GO:0008092:cytoskeletal protein binding
GO:0016772:transferase activity, transferring phosphorus-containing groups
GO:0003724:RNA helicase activity
GO:0003723:RNA binding
GO:0005515:protein binding
GO:0015031:protein transport

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.522	6.5e-89	0.562	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.691	2.07e-156	0.77	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.638	2.85e-154	0.765	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.846	1.29e-168	0.795	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.8	2.27e-156	0.77	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.816	2.32e-111	0.646	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.584	2.59e-106	0.629	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.514	5.68e-89	0.563	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.634	2.76e-124	0.687	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.948	5.21e-173	0.803	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.805	4.77e-177	0.811	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.637	4.36e-174	0.805	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.683	1.24e-135	0.719	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.994	3.33e-183	0.821	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

263763_at : AT2G21385
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.405	6.77e-97	0.594	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.499	8.64e-130	0.703	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.443	3.06e-111	0.646	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.638	1.4e-168	0.795	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.61	5.15e-164	0.786	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.606	1.55e-105	0.626	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.416	2.03e-88	0.56	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.409	1.21e-105	0.627	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.478	3.99e-124	0.687	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.69	1.93e-146	0.747	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.592	1.04e-156	0.77	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.447	1.84e-127	0.697	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.533	1.81e-156	0.77	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.698	2.32e-132	0.71	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

252122_at : AT3G51140
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009706:chloroplast inner membrane

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.663	2.46e-88	0.56	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.864	6.58e-145	0.743	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.786	1.4e-134	0.717	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	1.06	1.63e-154	0.765	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	1.07	3.26e-207	0.858	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.993	4.51e-96	0.591	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.807	4.3e-144	0.741	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.665	7.2e-94	0.583	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.878	4.61e-180	0.816	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	1.17	3.52e-148	0.751	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.989	1.54e-150	0.756	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.817	2.36e-181	0.818	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.897	2.29e-155	0.767	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	1.17	7.11e-131	0.706	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

264177_at : AT1G02150
GO:0005737:cytoplasm
GO:0008119:thiopurine S-methyltransferase activity
GO:0008152:metabolism
GO:0005509:calcium ion binding
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.468	1.17e-89	0.566	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.605	4.1e-142	0.736	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.513	5.73e-103	0.617	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.715	2.47e-132	0.71	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.677	6.29e-125	0.689	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.679	2.82e-88	0.56	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.529	7.05e-111	0.645	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.475	8.16e-99	0.602	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.584	5.57e-140	0.731	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.817	1.1e-145	0.745	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.661	3.13e-123	0.684	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.522	5.07e-120	0.674	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.626	1.42e-150	0.757	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.751	8.24e-95	0.586	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

262207_at : AT1G74850
GO:0004289:subtilase activity
GO:0006508:proteolysis and peptidolysis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.476	2.67e-97	0.596	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	0.616	2.63e-161	0.78	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast
253295_at AT4G33760	0.539	6.25e-127	0.695	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006810:transport GO:0016020:membrane GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006421:asparaginyl-tRNA aminoacylation GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0005351:sugar porter activity GO:0006412:protein biosynthesis GO:0005524:ATP binding
255328_at AT4G04350	0.738	1.54e-157	0.772	step: homoaconitate hydratase//leucine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0004409:homoaconitate hydratase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0009085:lysine biosynthesis GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248339_at AT5G52520	0.669	1.43e-123	0.685	step: proline-tRNA ligase GO:0005737:cytoplasm GO:0006435:threonyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0006433:prolyl-tRNA aminoacylation GO:0004829:threonine-tRNA ligase activity GO:0004827:proline-tRNA ligase activity GO:0006418:tRNA aminoacylation for protein translation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251807_at AT3G55400	0.708	8.36e-104	0.62	step: isoleucine-tRNA ligase//leucine-tRNA ligase GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004817:cysteine-tRNA ligase activity GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0009228:thiamin biosynthesis GO:0006438:valyl-tRNA aminoacylation GO:0005739:mitochondrion GO:0006429:leucyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0005524:ATP binding GO:0006423:cysteinyl-tRNA aminoacylation
264350_at AT1G11870	0.53	8.56e-116	0.661	step: serine-tRNA ligase GO:0006434:seryl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0004828:serine-tRNA ligase activity GO:0006464:protein modification GO:0005739:mitochondrion GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding
245413_at AT4G17300	0.453	3.1e-88	0.56	step: asparagine-tRNA ligase GO:0006421:asparaginyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
251442_at AT3G59980	0.559	1.59e-122	0.682	step: methionine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004826:phenylalanine-tRNA ligase activity GO:0000049:tRNA binding GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
248634_at AT5G49030	0.847	1.46e-181	0.819	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0008270:zinc ion binding GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
246509_at AT5G16715	0.706	8.03e-169	0.795	step: valine-tRNA ligase GO:0005737:cytoplasm GO:0004825:methionine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006431:methionyl-tRNA aminoacylation GO:0004822:isoleucine-tRNA ligase activity GO:0004823:leucine-tRNA ligase activity GO:0008270:zinc ion binding GO:0006438:valyl-tRNA aminoacylation GO:0006428:isoleucyl-tRNA aminoacylation GO:0006429:leucyl-tRNA aminoacylation GO:0005576:extracellular region GO:0008237:metallopeptidase activity GO:0006418:tRNA aminoacylation for protein translation GO:0004832:valine-tRNA ligase activity GO:0006508:proteolysis and peptidolysis GO:0006412:protein biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
256963_at AT3G13490	0.555	8.51e-161	0.779	step: asparagine-tRNA ligase GO:0005737:cytoplasm GO:0004824:lysine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0004815:aspartate-tRNA ligase activity GO:0006430:lysyl-tRNA aminoacylation GO:0004816:asparagine-tRNA ligase activity GO:0006421:asparaginyl-tRNA aminoacylation GO:0006422:aspartyl-tRNA aminoacylation GO:0003676:nucleic acid binding GO:0006418:tRNA aminoacylation for protein translation GO:0006350:transcription GO:0003899:DNA-directed RNA polymerase activity GO:0005524:ATP binding
251573_at AT3G58140	0.59	2e-123	0.685	step: phenylalanine-tRNA ligase GO:0005737:cytoplasm GO:0004826:phenylalanine-tRNA ligase activity GO:0004812:tRNA ligase activity GO:0006432:phenylalanyl-tRNA aminoacylation GO:0006418:tRNA aminoacylation for protein translation GO:0005524:ATP binding GO:0009507:chloroplast
252404_at AT3G48110	0.81	3.06e-127	0.696	step: glycine-tRNA ligase GO:0004820:glycine-tRNA ligase activity GO:0045995:regulation of embryonic development GO:0009507:chloroplast

259715_at : AT1G60990
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
252516_at AT3G46100	0.868	7.96e-88	0.558	step: histidine-tRNA ligase GO:0006427:histidyl-tRNA aminoacylation GO:0004821:histidine-tRNA ligase activity GO:0005739:mitochondrion GO:0009507:chloroplast
258475_at AT3G02660	1.15	1.97e-151	0.758	step: hydroxymethylglutaryl-CoA reductase (NADPH) GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity GO:0006437:tyrosyl-tRNA aminoacylation GO:0004812:tRNA ligase activity GO:0009058:biosynthesis GO:0003723:RNA binding GO:0006418:tRNA aminoacylation for protein translation GO:0004831:tyrosine-tRNA ligase activity GO:0005524:ATP binding GO:0009507:chloroplast