University of Alabama at Birmingham Section on Statistical Genetics School of Public Health Department of Biostatistics

PCL results for AraCyc pathway: glycine degradation I

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank probe set:gene id co-expressed with
1 255304_at : AT4G04850
GO:0006813:potassium ion transport
GO:0006885:regulation of pH
GO:0006810:transport
GO:0006812:cation transport
GO:0015386:potassium:hydrogen antiporter activity
GO:0015079:potassium ion transporter activity
GO:0008372:cellular component unknown
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		1.19 1.08e-106 0.63 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
266636_at
AT2G35370 		1.72 1.8e-88 0.561 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
259715_at
AT1G60990 		0.474 7.65e-111 0.645 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.4 2.37e-122 0.682 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266892_at
AT2G26080 		0.891 1.03e-88 0.562 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0006544:glycine metabolism
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0003677:DNA binding
260704_at
AT1G32470 		1.64 2.34e-95 0.588 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
2 262879_at : AT1G64860
GO:0003700:transcription factor activity
GO:0016987:sigma factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0006352:transcription initiation
GO:0003677:DNA binding
GO:0003899:DNA-directed RNA polymerase activity
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.739 5.55e-110 0.642 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
266636_at
AT2G35370 		1.04 1.41e-83 0.54 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
259715_at
AT1G60990 		0.275 7.89e-92 0.574 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.843 2.64e-114 0.656 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266892_at
AT2G26080 		0.593 1.32e-114 0.657 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0006544:glycine metabolism
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0003677:DNA binding
260704_at
AT1G32470 		0.984 9.88e-89 0.562 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
3 262059_at : AT1G80030
GO:0031072:heat shock protein binding
GO:0006457:protein folding
GO:0051082:unfolded protein binding
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		1.1 4.78e-113 0.652 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
266636_at
AT2G35370 		1.57 1.22e-88 0.561 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
259715_at
AT1G60990 		0.471 1.81e-156 0.77 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.28 2.85e-125 0.69 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266892_at
AT2G26080 		0.791 3.26e-82 0.534 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0006544:glycine metabolism
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0003677:DNA binding
260704_at
AT1G32470 		1.5 3.18e-97 0.596 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
4 253283_at : AT4G34090
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.83 1.64e-170 0.799 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.311 5.13e-136 0.72 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.883 1.08e-131 0.709 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.26 1.52e-165 0.789 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.19 1.19e-175 0.808 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
5 253208_at : AT4G34820
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		1 3.89e-143 0.739 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.385 1.65e-130 0.705 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.09 5.96e-124 0.686 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.51 3.56e-136 0.721 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.45 5.8e-156 0.769 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
6 262693_at : AT1G62780
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.597 2.61e-145 0.744 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.228 2.26e-128 0.699 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.645 1.97e-122 0.682 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		0.949 6.31e-173 0.803 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		0.888 8.79e-178 0.812 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
7 253790_at : AT4G28660
GO:0009539:photosystem II reaction center
GO:0016020:membrane
GO:0009654:oxygen evolving complex
GO:0015979:photosynthesis
GO:0005554:molecular function unknown
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.703 3.18e-143 0.739 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.266 2.17e-122 0.682 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.773 2.63e-129 0.702 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.09 5.69e-151 0.757 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.05 3.02e-177 0.811 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
8 258025_at : AT3G19480
GO:0006564:L-serine biosynthesis
GO:0016616:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004013:adenosylhomocysteinase activity
GO:0005739:mitochondrion
GO:0004617:phosphoglycerate dehydrogenase activity
GO:0008152:metabolism
GO:0003941:L-serine ammonia-lyase activity
GO:0016597:amino acid binding
GO:0006730:one-carbon compound metabolism
GO:0006094:gluconeogenesis
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.915 1.16e-136 0.722 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.349 2.29e-121 0.679 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.05 2.2e-143 0.739 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.38 3.42e-128 0.699 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.3 1.72e-136 0.722 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
9 264781_at : AT1G08540
GO:0003700:transcription factor activity
GO:0016987:sigma factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0006352:transcription initiation
GO:0003677:DNA binding
GO:0003899:DNA-directed RNA polymerase activity
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.986 3.76e-170 0.798 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.377 1.86e-148 0.752 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.02 4.74e-120 0.675 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.47 3.86e-151 0.758 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.4 2.12e-169 0.796 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
10 267294_at : AT2G23670
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009543:thylakoid lumen (sensu Viridiplantae)
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.712 3.37e-131 0.707 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.273 1.56e-118 0.67 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.797 7.32e-127 0.695 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.15 3.42e-163 0.784 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.08 6.88e-173 0.803 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
11 245118_at : AT2G41680
GO:0005489:electron transporter activity
GO:0015979:photosynthesis
GO:0008236:serine-type peptidase activity
GO:0005737:cytoplasm
GO:0015995:chlorophyll biosynthesis
GO:0004362:glutathione-disulfide reductase activity
GO:0045550:geranylgeranyl reductase activity
GO:0006749:glutathione metabolism
GO:0004148:dihydrolipoyl dehydrogenase activity
GO:0006508:proteolysis and peptidolysis
GO:0016491:oxidoreductase activity
GO:0006118:electron transport
GO:0050660:FAD binding
GO:0045454:cell redox homeostasis
GO:0009507:chloroplast
GO:0016853:isomerase activity
GO:0016639:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0016654:oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor
GO:0019430:removal of superoxide radicals
GO:0006537:glutamate biosynthesis
GO:0004791:thioredoxin-disulfide reductase activity
GO:0015036:disulfide oxidoreductase activity
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.869 1.49e-118 0.67 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.357 8.26e-139 0.728 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.984 1.63e-119 0.673 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.4 8.43e-143 0.738 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.32 2.55e-151 0.758 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
12 259258_at : AT3G07670
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0005739:mitochondrion
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.991 1.89e-118 0.67 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.392 1.37e-120 0.676 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.14 8.94e-127 0.695 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.62 1.31e-152 0.761 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.49 2.54e-147 0.749 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
13 250531_at : AT5G08650
GO:0005737:cytoplasm
GO:0006415:translational termination
GO:0006414:translational elongation
GO:0016149:translation release factor activity, codon specific
GO:0003924:GTPase activity
GO:0008415:acyltransferase activity
GO:0003743:translation initiation factor activity
GO:0007264:small GTPase mediated signal transduction
GO:0019281:methionine biosynthesis from homoserine via O-succinyl-L-homoserine and cystathione
GO:0001514:selenocysteine incorporation
GO:0003746:translation elongation factor activity
GO:0009507:chloroplast
GO:0006413:translational initiation
GO:0006412:protein biosynthesis
GO:0005524:ATP binding
GO:0005525:GTP binding
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.861 4.62e-130 0.704 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.331 2.04e-118 0.669 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.995 8.52e-143 0.738 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.42 6.2e-177 0.81 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.31 1.32e-170 0.799 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
14 253849_at : AT4G28080
GO:0003887:DNA-directed DNA polymerase activity
GO:0040008:regulation of growth
GO:0006260:DNA replication
GO:0005739:mitochondrion
GO:0003677:DNA binding
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.728 2.92e-192 0.836 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.262 9.81e-128 0.697 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.735 3.86e-118 0.669 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		1.07 6.96e-155 0.766 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		1.03 3.84e-189 0.831 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
15 249421_at : AT5G39830
GO:0004252:serine-type endopeptidase activity
GO:0004295:trypsin activity
GO:0009543:thylakoid lumen (sensu Viridiplantae)
GO:0005515:protein binding
GO:0006508:proteolysis and peptidolysis
GO:0008236:serine-type peptidase activity
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		1.58 1.42e-122 0.682 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.62 3.13e-120 0.675 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		1.77 6.74e-118 0.668 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		2.48 1.9e-134 0.716 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		2.28 1.65e-128 0.7 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
16 261488_at : AT1G14345
GO:0005576:extracellular region
GO:0019836:hemolysis
GO:0005554:molecular function unknown
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.641 9.24e-192 0.835 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism
259715_at
AT1G60990 		0.225 4.22e-117 0.665 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast
253387_at
AT4G33010 		0.672 2.61e-136 0.721 step: glycine dehydrogenase (decarboxylating)
GO:0005961:glycine dehydrogenase complex (decarboxylating)
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0004121:cystathionine beta-lyase activity
GO:0006544:glycine metabolism
GO:0006471:protein amino acid ADP-ribosylation
GO:0006520:amino acid metabolism
GO:0005739:mitochondrion
GO:0008483:transaminase activity
GO:0008152:metabolism
GO:0018826:methionine gamma-lyase activity
GO:0003950:NAD+ ADP-ribosyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
266636_at
AT2G35370 		0.982 2e-192 0.836 step: glycine dehydrogenase (decarboxylating)
GO:0009853:photorespiration
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0004375:glycine dehydrogenase (decarboxylating) activity
GO:0005739:mitochondrion
260704_at
AT1G32470 		0.938 6.39e-227 0.882 step: glycine dehydrogenase (decarboxylating)
GO:0005960:glycine cleavage complex
GO:0006546:glycine catabolism
GO:0005524:ATP binding
GO:0005739:mitochondrion
GO:0004375:glycine dehydrogenase (decarboxylating) activity
17 262645_at : AT1G62750
GO:0005737:cytoplasm
GO:0006415:translational termination
GO:0006414:translational elongation
GO:0016149:translation release factor activity, codon specific
GO:0008135:translation factor activity, nucleic acid binding
GO:0001514:selenocysteine incorporation
GO:0009507:chloroplast
GO:0003746:translation elongation factor activity
GO:0005525:GTP binding
GO:0006413:translational initiation
GO:0006412:protein biosynthesis
GO:0003743:translation initiation factor activity
probe set,gene slope pvalue rsquared annotations
264394_at
AT1G11860 		0.698 8.52e-142 0.735 step: aminomethyltransferase
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0008115:sarcosine oxidase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0005739:mitochondrion
GO:0046653:tetrahydrofolate metabolism