University of Alabama at Birmingham Section on Statistical Genetics School of Public Health Department of Biostatistics

PCL results for AraCyc pathway: gluconeogenesis

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank probe set:gene id co-expressed with
1 259193_at : AT3G01480
GO:0006457:protein folding
GO:0003755:peptidyl-prolyl cis-trans isomerase activity
GO:0009543:thylakoid lumen (sensu Viridiplantae)
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.26 4.38e-226 0.881 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		1.05 5.86e-100 0.606 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.26 2.34e-202 0.851 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.37 1.07e-279 0.929 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		0.854 9.32e-263 0.916 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
258570_at
AT3G04530 		-0.406 1.47e-83 0.54 step: phosphoenolpyruvate carboxykinase
GO:0004611:phosphoenolpyruvate carboxykinase activity
GO:0016301:kinase activity
GO:0006468:protein amino acid phosphorylation
GO:0008372:cellular component unknown
263761_at
AT2G21330 		1.36 1.04e-222 0.877 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.467 9.53e-106 0.627 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		0.852 2.86e-182 0.82 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.421 4.23e-88 0.559 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.82 9.97e-207 0.857 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.43 6.93e-257 0.911 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		1.19 9.02e-198 0.845 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.34 9.76e-271 0.922 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.519 2.85e-96 0.592 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
2 253337_at : AT4G33470
GO:0016575:histone deacetylation
GO:0004407:histone deacetylase activity
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.48 7.04e-146 0.745 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		1.41 1.24e-118 0.67 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.55 1.36e-168 0.795 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.69 5.35e-208 0.859 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		1.06 6.76e-210 0.861 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		1.63 9.12e-154 0.764 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
265735_at
AT2G01140 		-0.469 8.43e-82 0.532 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0005739:mitochondrion
GO:0009507:chloroplast
253966_at
AT4G26520 		0.601 1.36e-107 0.634 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		1.01 3.06e-131 0.707 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.556 2.58e-97 0.596 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.968 8.02e-140 0.73 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.67 3.55e-153 0.762 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		1.38 2.17e-129 0.702 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.6 1.51e-173 0.804 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.65 8.86e-90 0.566 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
3 262612_at : AT1G14150
GO:0030095:photosystem II (sensu Viridiplantae)
GO:0015979:photosynthesis
GO:0005509:calcium ion binding
GO:0009543:thylakoid lumen (sensu Viridiplantae)
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		0.954 1.62e-190 0.833 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		0.891 6.56e-137 0.723 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		0.996 1.28e-229 0.885 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.05 1.06e-242 0.899 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		0.662 5.8e-254 0.909 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		1.04 1.22e-196 0.843 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.364 3.3e-106 0.629 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		0.632 3.26e-146 0.746 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.342 6.62e-101 0.61 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.583 2.96e-134 0.716 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.06 1.37e-188 0.83 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		0.876 6.85e-153 0.762 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.02 9.46e-234 0.89 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.411 1.71e-101 0.612 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
4 247816_at : AT5G58260
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0005554:molecular function unknown
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.36 4.94e-171 0.8 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		1.23 4.45e-112 0.649 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.4 4.68e-187 0.828 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.51 7.53e-222 0.876 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		0.934 1.94e-204 0.854 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		1.51 9.26e-195 0.84 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.549 1.78e-120 0.676 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		0.922 1.1e-147 0.75 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.496 4.02e-100 0.607 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.881 9.32e-158 0.773 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.53 1.12e-178 0.814 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		1.26 1.63e-144 0.742 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.47 2.05e-215 0.869 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.594 1.87e-99 0.604 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
5 256088_at : AT1G20810
GO:0005528:FK506 binding
GO:0006457:protein folding
GO:0003755:peptidyl-prolyl cis-trans isomerase activity
GO:0009543:thylakoid lumen (sensu Viridiplantae)
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		2.4 6.03e-140 0.731 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		2.28 8.4e-114 0.655 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		2.53 5.35e-164 0.786 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		2.69 8.95e-180 0.816 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		1.67 3.82e-172 0.802 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		2.65 5.42e-149 0.753 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.992 1.47e-110 0.644 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		1.61 1.87e-117 0.666 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.912 5.03e-98 0.599 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		1.58 1.84e-137 0.724 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		2.71 6.85e-146 0.745 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		2.23 3.63e-122 0.681 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		2.59 4.71e-165 0.788 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		1.12 6.39e-106 0.628 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
6 252353_at : AT3G48200
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0012505:endomembrane system
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.39 1.68e-139 0.729 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		1.3 3.91e-106 0.628 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.45 6.31e-154 0.764 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.55 2.86e-170 0.798 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		0.969 9.73e-171 0.799 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		1.57 8.71e-165 0.787 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.584 4.95e-116 0.662 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		0.988 5.2e-147 0.748 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.524 8.36e-95 0.586 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.913 6.31e-136 0.72 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.59 3.94e-153 0.762 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		1.3 2.14e-123 0.685 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.52 1.23e-174 0.806 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.655 4.31e-109 0.639 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
7 250255_at : AT5G13730
GO:0003700:transcription factor activity
GO:0005622:intracellular
GO:0006355:regulation of transcription, DNA-dependent
GO:0006352:transcription initiation
GO:0003677:DNA binding
GO:0003899:DNA-directed RNA polymerase activity
GO:0016987:sigma factor activity
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.11 3.05e-141 0.734 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		1.09 2.52e-130 0.705 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.15 3.48e-153 0.762 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.24 5.76e-173 0.803 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0009507:chloroplast
257699_at
AT3G12780 		0.778 2.43e-177 0.811 step: phosphoglycerate kinase
GO:0005737:cytoplasm
GO:0004618:phosphoglycerate kinase activity
GO:0006096:glycolysis
GO:0005739:mitochondrion
263761_at
AT2G21330 		1.21 1.79e-143 0.739 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
253966_at
AT4G26520 		0.474 1.14e-124 0.688 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
247813_at
AT5G58330 		0.757 1.03e-125 0.692 step: malate dehydrogenase
GO:0016615:malate dehydrogenase activity
GO:0005739:mitochondrion
GO:0030060:L-malate dehydrogenase activity
GO:0006100:tricarboxylic acid cycle intermediate metabolism
GO:0006108:malate metabolism
GO:0016491:oxidoreductase activity
256228_at
AT1G56190 		0.416 5.23e-94 0.583 step: phosphoglycerate kinase
GO:0006096:glycolysis
GO:0004618:phosphoglycerate kinase activity
GO:0006118:electron transport
GO:0005739:mitochondrion
GO:0016491:oxidoreductase activity
261206_at
AT1G12800 		0.731 5.57e-139 0.728 step: fructose-bisphosphate aldolase
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast
261197_at
AT1G12900 		1.26 6.05e-151 0.757 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0004365:glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity
GO:0006561:proline biosynthesis
GO:0051287:NAD binding
GO:0004735:pyrroline-5-carboxylate reductase activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity
GO:0006096:glycolysis
GO:0009507:chloroplast
257807_at
AT3G26650 		1.04 9.84e-125 0.689 step: glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0006561:proline biosynthesis
GO:0006725:aromatic compound metabolism
GO:0006006:glucose metabolism
GO:0006096:glycolysis
GO:0009507:chloroplast
259625_at
AT1G42970 		1.21 3.26e-171 0.8 step: glyceraldehyde-3-phosphate dehydrogenase (NADP+)//glyceraldehyde-3-phosphate dehydrogenase
GO:0008943:glyceraldehyde-3-phosphate dehydrogenase activity
GO:0008886:glyceraldehyde-3-phosphate dehydrogenase (NADP+) activity
GO:0009088:threonine biosynthesis
GO:0006006:glucose metabolism
GO:0009086:methionine biosynthesis
GO:0006096:glycolysis
GO:0009507:chloroplast
260837_at
AT1G43670 		0.512 3.96e-102 0.614 step: fructose-bisphosphatase//phosphoric ester hydrolase
GO:0042578:phosphoric ester hydrolase activity
GO:0006000:fructose metabolism
GO:0042132:fructose-bisphosphatase activity
GO:0005975:carbohydrate metabolism
GO:0008372:cellular component unknown
8 255719_at : AT1G32080
GO:0015703:chromate transport
GO:0008067:metabotropic glutamate, GABA-B-like receptor activity
GO:0007049:cell cycle
GO:0042626:ATPase activity, coupled to transmembrane movement of substances
GO:0006885:regulation of pH
GO:0001584:rhodopsin-like receptor activity
GO:0005215:transporter activity
GO:0015675:nickel ion transport
GO:0007186:G-protein coupled receptor protein signaling pathway
GO:0005524:ATP binding
GO:0005351:sugar porter activity
GO:0008137:NADH dehydrogenase (ubiquinone) activity
GO:0006810:transport
GO:0015299:solute:hydrogen antiporter activity
GO:0006605:protein targeting
GO:0009401:phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0015099:nickel ion transporter activity
GO:0042773:ATP synthesis coupled electron transport
GO:0008982:protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
GO:0008654:phospholipid biosynthesis
GO:0015109:chromate transporter activity
GO:0009706:chloroplast inner membrane
GO:0004605:phosphatidate cytidylyltransferase activity
probe set,gene slope pvalue rsquared annotations
252929_at
AT4G38970 		1.07 6.13e-214 0.867 step: fructose-bisphosphate aldolase
GO:0006098:pentose-phosphate shunt
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
253971_at
AT4G26530 		0.911 1.88e-105 0.626 step: fructose-bisphosphate aldolase
GO:0004332:fructose-bisphosphate aldolase activity
GO:0008372:cellular component unknown
GO:0006096:glycolysis
250498_at
AT5G09660 		1.08 8.25e-211 0.863 step: malate dehydrogenase
GO:0042579:microbody
GO:0006108:malate metabolism
GO:0016615:malate dehydrogenase activity
GO:0008152:metabolism
GO:0006100:tricarboxylic acid cycle intermediate metabolism
251885_at
AT3G54050 		1.17 1.71e-262 0.916 <