PCL results for AraCyc pathway: fatty acid biosynthesis -- initial steps

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank

probe set:gene id

co-expressed with

245138_at : AT2G45190
GO:0045165:cell fate commitment
GO:0009944:polarity specification of adaxial/abaxial axis
GO:0003700:transcription factor activity
GO:0005634:nucleus
GO:0030528:transcription regulator activity
GO:0009933:meristem organization
GO:0009909:regulation of flower development

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.956	6.65e-111	0.645	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
250125_at AT5G16390	0.446	1.25e-90	0.57	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
265918_at AT2G15090	1.21	7.11e-113	0.652	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
253285_at AT4G34250	1.05	2.24e-92	0.577	step: 3-oxoacyl-[acyl-carrier protein] synthase//acyltransferase GO:0030497:fatty acid elongation GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0012505:endomembrane system GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
262176_at AT1G74960	0.514	6.44e-95	0.587	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
255732_at AT1G25450	1.18	1.16e-103	0.62	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

260982_at : AT1G53520
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
250125_at AT5G16390	0.441	2.27e-126	0.693	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
267308_at AT2G30200	0.546	7.43e-114	0.655	step: [acyl-carrier protein] S-malonyltransferase GO:0006633:fatty acid biosynthesis GO:0004314:[acyl-carrier protein] S-malonyltransferase activity GO:0016740:transferase activity GO:0008152:metabolism GO:0045226:extracellular polysaccharide biosynthesis GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
246613_at AT5G35360	0.42	2.13e-101	0.611	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
265918_at AT2G15090	1.01	9.62e-89	0.562	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.484	2.43e-112	0.65	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
255732_at AT1G25450	1.04	1.48e-100	0.608	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

266035_at : AT2G05990
GO:0006633:fatty acid biosynthesis
GO:0005835:fatty acid synthase complex
GO:0004318:enoyl-[acyl-carrier protein] reductase (NADH) activity
GO:0016631:enoyl-[acyl-carrier protein] reductase activity
GO:0016491:oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
265120_at AT1G62640	0.513	2.45e-128	0.699	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006084:acetyl-CoA metabolism GO:0004421:hydroxymethylglutaryl-CoA synthase activity GO:0008415:acyltransferase activity GO:0009058:biosynthesis GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0006633:fatty acid biosynthesis GO:0009507:chloroplast
250125_at AT5G16390	0.532	4.49e-112	0.649	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
246613_at AT5G35360	0.603	3.63e-175	0.807	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
251736_at AT3G56130	0.666	1.39e-120	0.676	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009317:acetyl-CoA carboxylase complex GO:0012505:endomembrane system GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast GO:0005488:binding
267308_at AT2G30200	0.746	4.45e-163	0.784	step: [acyl-carrier protein] S-malonyltransferase GO:0006633:fatty acid biosynthesis GO:0004314:[acyl-carrier protein] S-malonyltransferase activity GO:0016740:transferase activity GO:0008152:metabolism GO:0045226:extracellular polysaccharide biosynthesis GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast

257003_at : AT3G14110
GO:0009941:chloroplast envelope
GO:0005554:molecular function unknown
GO:0015995:chlorophyll biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.943	2.84e-93	0.58	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
253285_at AT4G34250	1.13	3.35e-100	0.607	step: 3-oxoacyl-[acyl-carrier protein] synthase//acyltransferase GO:0030497:fatty acid elongation GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0012505:endomembrane system GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
255732_at AT1G25450	1.21	1.17e-99	0.605	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
265918_at AT2G15090	1.26	1.2e-111	0.647	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.552	1.63e-105	0.626	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

258086_at : AT3G25860
GO:0045254:pyruvate dehydrogenase complex
GO:0015689:molybdate ion transport
GO:0005515:protein binding
GO:0045252:oxoglutarate dehydrogenase complex
GO:0001584:rhodopsin-like receptor activity
GO:0016021:integral to membrane
GO:0008415:acyltransferase activity
GO:0006096:glycolysis
GO:0008152:metabolism
GO:0006099:tricarboxylic acid cycle
GO:0004149:dihydrolipoyllysine-residue succinyltransferase activity
GO:0004742:dihydrolipoyllysine-residue acetyltransferase activity
GO:0007186:G-protein coupled receptor protein signaling pathway
GO:0015412:molybdate-transporting ATPase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
265120_at AT1G62640	0.57	1.03e-142	0.738	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006084:acetyl-CoA metabolism GO:0004421:hydroxymethylglutaryl-CoA synthase activity GO:0008415:acyltransferase activity GO:0009058:biosynthesis GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0006633:fatty acid biosynthesis GO:0009507:chloroplast
250125_at AT5G16390	0.575	1.64e-111	0.647	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
246613_at AT5G35360	0.619	1.08e-138	0.727	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
251736_at AT3G56130	0.663	2.82e-91	0.572	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009317:acetyl-CoA carboxylase complex GO:0012505:endomembrane system GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast GO:0005488:binding
267308_at AT2G30200	0.791	3.93e-149	0.753	step: [acyl-carrier protein] S-malonyltransferase GO:0006633:fatty acid biosynthesis GO:0004314:[acyl-carrier protein] S-malonyltransferase activity GO:0016740:transferase activity GO:0008152:metabolism GO:0045226:extracellular polysaccharide biosynthesis GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast

255046_at : AT4G09650
GO:0046933:hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0016469:hydrogen-transporting two-sector ATPase complex
GO:0015986:ATP synthesis coupled proton transport
GO:0046961:hydrogen-transporting ATPase activity, rotational mechanism
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.517	5.25e-105	0.624	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.361	3.93e-89	0.563	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
258269_at AT3G15690	0.205	2.46e-84	0.543	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0007160:cell-matrix adhesion GO:0009317:acetyl-CoA carboxylase complex GO:0008305:integrin complex GO:0003989:acetyl-CoA carboxylase activity GO:0007155:cell adhesion GO:0009507:chloroplast
261420_at AT1G07720	0.461	5.74e-85	0.546	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006633:fatty acid biosynthesis GO:0009058:biosynthesis GO:0008415:acyltransferase activity GO:0012505:endomembrane system GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
262176_at AT1G74960	0.282	6.76e-95	0.587	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

254370_at : AT4G21750
GO:0003700:transcription factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0005634:nucleus
GO:0009913:epidermal cell differentiation
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	1.03	1.67e-170	0.799	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.621	5.5e-84	0.541	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
255732_at AT1G25450	1.12	1.03e-98	0.601	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
265918_at AT2G15090	1.19	5.61e-118	0.668	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.54	4.07e-127	0.696	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

261165_at : AT1G34430
GO:0009320:phosphoribosylaminoimidazole carboxylase complex
GO:0045254:pyruvate dehydrogenase complex
GO:0006086:acetyl-CoA biosynthesis from pyruvate
GO:0005515:protein binding
GO:0045252:oxoglutarate dehydrogenase complex
GO:0001584:rhodopsin-like receptor activity
GO:0016021:integral to membrane
GO:0008415:acyltransferase activity
GO:0008152:metabolism
GO:0004638:phosphoribosylaminoimidazole carboxylase activity
GO:0006099:tricarboxylic acid cycle
GO:0006189:'de novo' IMP biosynthesis
GO:0004149:dihydrolipoyllysine-residue succinyltransferase activity
GO:0004742:dihydrolipoyllysine-residue acetyltransferase activity
GO:0007186:G-protein coupled receptor protein signaling pathway
GO:0006096:glycolysis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
265120_at AT1G62640	0.548	1.65e-83	0.539	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006084:acetyl-CoA metabolism GO:0004421:hydroxymethylglutaryl-CoA synthase activity GO:0008415:acyltransferase activity GO:0009058:biosynthesis GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0006633:fatty acid biosynthesis GO:0009507:chloroplast
250125_at AT5G16390	0.667	5.09e-124	0.687	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
246613_at AT5G35360	0.688	2.76e-132	0.71	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
251736_at AT3G56130	0.75	1.36e-92	0.577	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009317:acetyl-CoA carboxylase complex GO:0012505:endomembrane system GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast GO:0005488:binding
267308_at AT2G30200	0.856	1.94e-127	0.697	step: [acyl-carrier protein] S-malonyltransferase GO:0006633:fatty acid biosynthesis GO:0004314:[acyl-carrier protein] S-malonyltransferase activity GO:0016740:transferase activity GO:0008152:metabolism GO:0045226:extracellular polysaccharide biosynthesis GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast

261196_at : AT1G12860
GO:0003700:transcription factor activity
GO:0005634:nucleus
GO:0005576:extracellular region
GO:0045449:regulation of transcription
GO:0003677:DNA binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.849	5.19e-106	0.628	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
250125_at AT5G16390	0.391	2.46e-83	0.539	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
255732_at AT1G25450	1	1.09e-87	0.557	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
265918_at AT2G15090	1.09	4.67e-113	0.652	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.513	3.85e-137	0.723	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

263432_at : AT2G22230
GO:0005737:cytoplasm
GO:0006633:fatty acid biosynthesis
GO:0008693:3-hydroxydecanoyl-[acyl-carrier protein] dehydratase activity
GO:0016836:hydro-lyase activity
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0019171:3-hydroxyacyl-[acyl-carrier protein] dehydratase activity
GO:0009507:chloroplast
GO:0016491:oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
262157_at AT1G52670	0.545	8.88e-84	0.541	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009317:acetyl-CoA carboxylase complex GO:0003989:acetyl-CoA carboxylase activity GO:0005488:binding GO:0009507:chloroplast
265120_at AT1G62640	0.587	6.03e-90	0.567	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006084:acetyl-CoA metabolism GO:0004421:hydroxymethylglutaryl-CoA synthase activity GO:0008415:acyltransferase activity GO:0009058:biosynthesis GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0006633:fatty acid biosynthesis GO:0009507:chloroplast
250125_at AT5G16390	0.685	1.57e-116	0.663	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
246613_at AT5G35360	0.626	2.32e-83	0.539	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
267308_at AT2G30200	0.904	1.26e-132	0.711	step: [acyl-carrier protein] S-malonyltransferase GO:0006633:fatty acid biosynthesis GO:0004314:[acyl-carrier protein] S-malonyltransferase activity GO:0016740:transferase activity GO:0008152:metabolism GO:0045226:extracellular polysaccharide biosynthesis GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast

254102_at : AT4G25050
GO:0006633:fatty acid biosynthesis
GO:0000036:acyl carrier activity
GO:0009416:response to light
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.633	9.25e-131	0.706	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.408	4.29e-84	0.542	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
258269_at AT3G15690	0.235	3.13e-83	0.538	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0007160:cell-matrix adhesion GO:0009317:acetyl-CoA carboxylase complex GO:0008305:integrin complex GO:0003989:acetyl-CoA carboxylase activity GO:0007155:cell adhesion GO:0009507:chloroplast
265918_at AT2G15090	0.705	1.75e-85	0.548	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.33	3.65e-99	0.603	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

255779_at : AT1G18650
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0031225:anchored to membrane

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.708	7.28e-86	0.55	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
250125_at AT5G16390	0.349	5.01e-84	0.542	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
255732_at AT1G25450	0.877	1.65e-82	0.535	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
265918_at AT2G15090	0.968	9.9e-111	0.644	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.416	2.09e-97	0.596	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

262029_at : AT1G35680
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.766	5.39e-124	0.686	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.498	2.08e-83	0.539	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
258269_at AT3G15690	0.286	1.05e-81	0.531	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0007160:cell-matrix adhesion GO:0009317:acetyl-CoA carboxylase complex GO:0008305:integrin complex GO:0003989:acetyl-CoA carboxylase activity GO:0007155:cell adhesion GO:0009507:chloroplast
265918_at AT2G15090	0.893	1.43e-94	0.585	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.423	4.46e-115	0.659	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

266570_at : AT2G24090
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.747	1.31e-108	0.637	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.513	7.52e-88	0.558	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
258269_at AT3G15690	0.299	1e-89	0.566	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0007160:cell-matrix adhesion GO:0009317:acetyl-CoA carboxylase complex GO:0008305:integrin complex GO:0003989:acetyl-CoA carboxylase activity GO:0007155:cell adhesion GO:0009507:chloroplast
265918_at AT2G15090	0.86	2.24e-81	0.53	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.42	9.65e-108	0.634	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

250190_at : AT5G14320
GO:0015935:small ribosomal subunit
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0006412:protein biosynthesis
GO:0005840:ribosome

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.735	9.78e-126	0.692	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.475	2.35e-82	0.534	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
258269_at AT3G15690	0.273	2.16e-81	0.53	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0007160:cell-matrix adhesion GO:0009317:acetyl-CoA carboxylase complex GO:0008305:integrin complex GO:0003989:acetyl-CoA carboxylase activity GO:0007155:cell adhesion GO:0009507:chloroplast
265918_at AT2G15090	0.814	1.2e-81	0.531	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.395	9.6e-106	0.627	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

266509_at : AT2G47940
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004252:serine-type endopeptidase activity
GO:0004295:trypsin activity
GO:0010206:photosystem II repair
GO:0009533:chloroplast stromal thylakoid
GO:0006508:proteolysis and peptidolysis
GO:0008236:serine-type peptidase activity

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.821	2.13e-107	0.633	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
263606_at AT2G16280	0.55	6.85e-81	0.528	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
250125_at AT5G16390	0.381	1.56e-86	0.552	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
265918_at AT2G15090	0.96	4.05e-84	0.542	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
262176_at AT1G74960	0.512	3.09e-159	0.776	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0004312:fatty-acid synthase activity GO:0006633:fatty acid biosynthesis GO:0009536:plastid GO:0006636:fatty acid desaturation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

262376_at : AT1G72970
GO:0007267:cell-cell signaling
GO:0005576:extracellular region
GO:0050660:FAD binding
GO:0046593:mandelonitrile lyase activity
GO:0016832:aldehyde-lyase activity

probe set,gene	slope	pvalue	rsquared	annotations
267377_at AT2G26250	0.48	6.99e-81	0.528	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0009913:epidermal cell differentiation GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0003824:catalytic activity GO:0000038:very-long-chain fatty acid metabolism GO:0008610:lipid biosynthesis
250125_at AT5G16390	0.239	1.85e-81	0.53	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
253285_at AT4G34250	0.561	5.68e-81	0.528	step: 3-oxoacyl-[acyl-carrier protein] synthase//acyltransferase GO:0030497:fatty acid elongation GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0012505:endomembrane system GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity
265918_at AT2G15090	0.661	1.38e-105	0.627	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0009523:photosystem II GO:0016021:integral to membrane GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0008415:acyltransferase activity GO:0030497:fatty acid elongation GO:0012505:endomembrane system GO:0000038:very-long-chain fatty acid metabolism
255732_at AT1G25450	0.661	1.72e-107	0.633	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0042335:cuticle biosynthesis GO:0000038:very-long-chain fatty acid metabolism GO:0008415:acyltransferase activity GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity

248903_at : AT5G46290
GO:0004312:fatty-acid synthase activity
GO:0003824:catalytic activity
GO:0006633:fatty acid biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
265120_at AT1G62640	0.729	1.73e-106	0.63	step: 3-oxoacyl-[acyl-carrier protein] synthase GO:0006084:acetyl-CoA metabolism GO:0004421:hydroxymethylglutaryl-CoA synthase activity GO:0008415:acyltransferase activity GO:0009058:biosynthesis GO:0004315:3-oxoacyl-[acyl-carrier protein] synthase activity GO:0006633:fatty acid biosynthesis GO:0009507:chloroplast
250125_at AT5G16390	0.836	2.04e-133	0.713	step: acetyl-CoA carboxylase GO:0006633:fatty acid biosynthesis GO:0009570:chloroplast stroma GO:0009374:biotin binding GO:0003989:acetyl-CoA carboxylase activity GO:0009507:chloroplast
246613_at AT5G35360	0.82	3.1e-117