|
rank
|
probe set:gene id
|
co-expressed with
|
|
1
|
259311_at
:
AT3G05060
GO:0000004:biological process unknown
GO:0008372:cellular component unknown
GO:0003677:DNA binding
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
0.581
|
4.11e-90
|
0.567
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.779
|
6.96e-174
|
0.805
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
255089_at
AT4G09320
|
0.296
|
9.5e-90
|
0.566
|
step: nucleoside-diphosphate kinase
GO:0006228:UTP biosynthesis
GO:0019690:pyrimidine deoxyribonucleoside interconversion
GO:0009218:pyrimidine ribonucleotide metabolism
GO:0006241:CTP biosynthesis
GO:0004550:nucleoside diphosphate kinase activity
GO:0005524:ATP binding
GO:0009117:nucleotide metabolism
GO:0008372:cellular component unknown
GO:0006183:GTP biosynthesis
|
267421_at
AT2G35040
|
0.648
|
2.94e-103
|
0.618
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
0.994
|
2.94e-121
|
0.678
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.538
|
1.61e-92
|
0.577
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
262754_at
AT1G16350
|
0.7
|
2.6e-87
|
0.556
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
260294_at
AT1G63660
|
0.54
|
1.92e-90
|
0.569
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
258243_at
AT3G27740
|
0.437
|
7.28e-103
|
0.617
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
2
|
263372_at
:
AT2G20450
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
0.712
|
1.02e-100
|
0.609
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.879
|
7.02e-141
|
0.733
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
255089_at
AT4G09320
|
0.354
|
9.43e-94
|
0.582
|
step: nucleoside-diphosphate kinase
GO:0006228:UTP biosynthesis
GO:0019690:pyrimidine deoxyribonucleoside interconversion
GO:0009218:pyrimidine ribonucleotide metabolism
GO:0006241:CTP biosynthesis
GO:0004550:nucleoside diphosphate kinase activity
GO:0005524:ATP binding
GO:0009117:nucleotide metabolism
GO:0008372:cellular component unknown
GO:0006183:GTP biosynthesis
|
267421_at
AT2G35040
|
0.722
|
7.14e-86
|
0.55
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
1.1
|
2.84e-97
|
0.596
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.632
|
4.87e-91
|
0.571
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
262754_at
AT1G16350
|
0.826
|
7.74e-87
|
0.554
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
260294_at
AT1G63660
|
0.643
|
6.41e-93
|
0.579
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
258243_at
AT3G27740
|
0.523
|
1.77e-107
|
0.633
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
3
|
261301_at
:
AT1G48570
GO:0006355:regulation of transcription, DNA-dependent
GO:0004867:serine-type endopeptidase inhibitor activity
GO:0003677:DNA binding
GO:0005488:binding
GO:0009507:chloroplast
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
251599_at
AT3G57610
|
0.475
|
2e-100
|
0.608
|
step: adenylosuccinate synthase
GO:0004019:adenylosuccinate synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0005525:GTP binding
GO:0009152:purine ribonucleotide biosynthesis
GO:0009507:chloroplast
|
250403_at
AT5G10920
|
0.692
|
3.01e-131
|
0.707
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.697
|
3.06e-90
|
0.568
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
253252_at
AT4G34740
|
0.726
|
9.89e-85
|
0.545
|
step: amidophosphoribosyltransferase
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0004044:amidophosphoribosyltransferase activity
GO:0004360:glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0045982:negative regulation of purine base metabolism
GO:0016740:transferase activity
GO:0006529:asparagine biosynthesis
GO:0004749:ribose phosphate diphosphokinase activity
GO:0016564:transcriptional repressor activity
GO:0009165:nucleotide biosynthesis
GO:0009116:nucleoside metabolism
GO:0008152:metabolism
GO:0003677:DNA binding
GO:0016051:carbohydrate biosynthesis
GO:0016481:negative regulation of transcription
GO:0004066:asparagine synthase (glutamine-hydrolyzing) activity
GO:0009507:chloroplast
|
267421_at
AT2G35040
|
0.715
|
2.67e-116
|
0.663
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
0.954
|
3.97e-86
|
0.551
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.589
|
3.64e-101
|
0.611
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
260294_at
AT1G63660
|
0.572
|
7.7e-89
|
0.562
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
258243_at
AT3G27740
|
0.464
|
1.24e-101
|
0.612
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
4
|
256862_at
:
AT3G23940
GO:0004160:dihydroxy-acid dehydratase activity
GO:0009255:Entner-Doudoroff pathway
GO:0009099:valine biosynthesis
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0004456:phosphogluconate dehydratase activity
GO:0009097:isoleucine biosynthesis
GO:0009507:chloroplast
GO:0009082:branched chain family amino acid biosynthesis
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
251599_at
AT3G57610
|
0.505
|
1.66e-132
|
0.711
|
step: adenylosuccinate synthase
GO:0004019:adenylosuccinate synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0005525:GTP binding
GO:0009152:purine ribonucleotide biosynthesis
GO:0009507:chloroplast
|
250403_at
AT5G10920
|
0.717
|
1.09e-164
|
0.787
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.769
|
1e-133
|
0.714
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
267421_at
AT2G35040
|
0.755
|
4.34e-154
|
0.765
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
1.08
|
3.52e-142
|
0.736
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.553
|
3.05e-87
|
0.555
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
262754_at
AT1G16350
|
0.811
|
1.38e-121
|
0.679
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
260294_at
AT1G63660
|
0.551
|
6.61e-84
|
0.541
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
258243_at
AT3G27740
|
0.491
|
2.3e-132
|
0.71
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
5
|
259096_at
:
AT3G04840
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005843:cytosolic small ribosomal subunit (sensu Eukaryota)
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
0.968
|
1.08e-117
|
0.667
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
1.13
|
1.81e-135
|
0.719
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
255089_at
AT4G09320
|
0.459
|
4.26e-93
|
0.579
|
step: nucleoside-diphosphate kinase
GO:0006228:UTP biosynthesis
GO:0019690:pyrimidine deoxyribonucleoside interconversion
GO:0009218:pyrimidine ribonucleotide metabolism
GO:0006241:CTP biosynthesis
GO:0004550:nucleoside diphosphate kinase activity
GO:0005524:ATP binding
GO:0009117:nucleotide metabolism
GO:0008372:cellular component unknown
GO:0006183:GTP biosynthesis
|
263882_at
AT2G21790
|
1.49
|
1.05e-112
|
0.651
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.814
|
2.01e-88
|
0.56
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
258243_at
AT3G27740
|
0.673
|
1.51e-104
|
0.623
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
250484_at
AT5G10240
|
0.695
|
4.26e-84
|
0.542
|
step: amidophosphoribosyltransferase//asparagine synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0004044:amidophosphoribosyltransferase activity
GO:0004360:glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GO:0006529:asparagine biosynthesis
GO:0016051:carbohydrate biosynthesis
GO:0009113:purine base biosynthesis
GO:0008152:metabolism
GO:0004066:asparagine synthase (glutamine-hydrolyzing) activity
|
260294_at
AT1G63660
|
0.831
|
2.17e-91
|
0.573
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
262754_at
AT1G16350
|
1.06
|
1.14e-83
|
0.54
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
|
|
6
|
247566_at
:
AT5G61170
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
248506_at
AT5G50370
|
0.656
|
1.46e-81
|
0.531
|
step: adenylate kinase
GO:0006139:nucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0019201:nucleotide kinase activity
GO:0046034:ATP metabolism
GO:0016776:phosphotransferase activity, phosphate group as acceptor
GO:0004017:adenylate kinase activity
GO:0009061:anaerobic respiration
GO:0009117:nucleotide metabolism
GO:0005739:mitochondrion
GO:0005524:ATP binding
|
250403_at
AT5G10920
|
0.803
|
1.1e-110
|
0.644
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.918
|
4.08e-117
|
0.665
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
255089_at
AT4G09320
|
0.371
|
1.03e-81
|
0.531
|
step: nucleoside-diphosphate kinase
GO:0006228:UTP biosynthesis
GO:0019690:pyrimidine deoxyribonucleoside interconversion
GO:0009218:pyrimidine ribonucleotide metabolism
GO:0006241:CTP biosynthesis
GO:0004550:nucleoside diphosphate kinase activity
GO:0005524:ATP binding
GO:0009117:nucleotide metabolism
GO:0008372:cellular component unknown
GO:0006183:GTP biosynthesis
|
263882_at
AT2G21790
|
1.2
|
2.82e-95
|
0.588
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.671
|
2e-82
|
0.535
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
262754_at
AT1G16350
|
0.907
|
5.73e-87
|
0.554
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
260294_at
AT1G63660
|
0.712
|
1.87e-95
|
0.589
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
258243_at
AT3G27740
|
0.535
|
1.81e-86
|
0.552
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
7
|
264806_at
:
AT1G08610
GO:0003735:structural constituent of ribosome
GO:0015934:large ribosomal subunit
GO:0006412:protein biosynthesis
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
258106_at
AT3G23580
|
0.606
|
9.26e-95
|
0.586
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0009186:deoxyribonucleoside diphosphate metabolism
GO:0009259:ribonucleotide metabolism
|
251830_at
AT3G55010
|
0.782
|
1.73e-106
|
0.63
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
267421_at
AT2G35040
|
0.779
|
7.62e-127
|
0.695
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
1.05
|
1.29e-94
|
0.586
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.629
|
5.1e-102
|
0.614
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
258243_at
AT3G27740
|
0.513
|
4.66e-116
|
0.662
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
260294_at
AT1G63660
|
0.626
|
3.37e-97
|
0.596
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
250403_at
AT5G10920
|
0.696
|
5.26e-107
|
0.632
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
|
|
8
|
249315_at
:
AT5G41190
GO:0016151:nickel ion binding
GO:0005840:ribosome
GO:0006464:protein modification
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
0.91
|
6.15e-106
|
0.628
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
1.02
|
1.84e-104
|
0.623
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
253213_at
AT4G34910
|
0.742
|
1.33e-110
|
0.644
|
step: adenylosuccinate synthase
GO:0004019:adenylosuccinate synthase activity
GO:0016151:nickel ion binding
GO:0008026:ATP-dependent helicase activity
GO:0006461:protein complex assembly
GO:0004386:helicase activity
GO:0008372:cellular component unknown
GO:0003676:nucleic acid binding
GO:0006164:purine nucleotide biosynthesis
GO:0006259:DNA metabolism
GO:0005524:ATP binding
GO:0005525:GTP binding
|
267421_at
AT2G35040
|
0.944
|
2.81e-96
|
0.592
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
1.37
|
5.02e-93
|
0.579
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
260294_at
AT1G63660
|
0.891
|
6.88e-129
|
0.701
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
256978_at
AT3G21110
|
0.846
|
5.54e-111
|
0.645
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
258243_at
AT3G27740
|
0.666
|
8.92e-112
|
0.648
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
|
|
9
|
258715_at
:
AT3G09630
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
1.06
|
1.15e-104
|
0.623
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
1.27
|
7.49e-130
|
0.703
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast
|
267421_at
AT2G35040
|
1.11
|
3.97e-97
|
0.595
|
step: IMP cyclohydrolase
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast
|
263882_at
AT2G21790
|
1.64
|
5.02e-101
|
0.61
|
step: ribonucleoside-diphosphate reductase
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication
|
256978_at
AT3G21110
|
0.926
|
3.27e-89
|
0.564
|
step: phosphoribosylaminoimidazolesuccinocarboxamide synthase
GO:0004639:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0009507:chloroplast
|
258243_at
AT3G27740
|
0.806
|
1.99e-126
|
0.694
|
step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast
|
260294_at
AT1G63660
|
0.946
|
2.17e-92
|
0.577
|
step: GMP synthase (glutamine-hydrolyzing)
GO:0005737:cytoplasm
GO:0006177:GMP biosynthesis
GO:0009435:NAD biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006164:purine nucleotide biosynthesis
GO:0004049:anthranilate synthase activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0009117:nucleotide metabolism
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis
GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity
GO:0005524:ATP binding
|
262754_at
AT1G16350
|
1.3
|
2.78e-106
|
0.629
|
step: IMP dehydrogenase
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity
|
|
|
10
|
262880_at
:
AT1G64880
GO:0015935:small ribosomal subunit
GO:0016020:membrane
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
|
|
probe set,gene
|
slope
|
pvalue
|
rsquared
|
annotations
|
250403_at
AT5G10920
|
0.683
|
2.27e-125
|
0.691
|
step: adenylosuccinate lyase
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast
|
251830_at
AT3G55010
|
0.819
|
2.94e-162
|
0.782
|
step: catalytic
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
| |
