PCL results for AraCyc pathway: lysine biosynthesis I

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank

probe set:gene id

co-expressed with

260685_at : AT1G17650
GO:0008679:2-hydroxy-3-oxopropionate reductase activity
GO:0006571:tyrosine biosynthesis
GO:0006573:valine metabolism
GO:0008442:3-hydroxyisobutyrate dehydrogenase activity
GO:0006098:pentose-phosphate shunt
GO:0008883:glutamyl-tRNA reductase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
GO:0004665:prephenate dehydrogenase (NADP+) activity
GO:0004616:phosphogluconate dehydrogenase (decarboxylating) activity
GO:0046487:glyoxylate metabolism

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.308	7.89e-100	0.606	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.404	1.29e-97	0.597	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.922	2.65e-109	0.64	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.78	8.9e-174	0.805	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248634_at : AT5G49030
GO:0005737:cytoplasm
GO:0004825:methionine-tRNA ligase activity
GO:0004812:tRNA ligase activity
GO:0006431:methionyl-tRNA aminoacylation
GO:0004822:isoleucine-tRNA ligase activity
GO:0004823:leucine-tRNA ligase activity
GO:0006438:valyl-tRNA aminoacylation
GO:0006428:isoleucyl-tRNA aminoacylation
GO:0006429:leucyl-tRNA aminoacylation
GO:0008270:zinc ion binding
GO:0006418:tRNA aminoacylation for protein translation
GO:0004832:valine-tRNA ligase activity
GO:0006412:protein biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.453	5.17e-98	0.599	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.629	2.13e-115	0.66	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.32	8.04e-98	0.598	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.13	3.82e-157	0.771	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

260793_at : AT1G06190
GO:0008017:microtubule binding
GO:0003677:DNA binding
GO:0016055:Wnt receptor signaling pathway
GO:0005515:protein binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.388	2.63e-97	0.596	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.523	9.61e-104	0.62	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.15	5.64e-104	0.621	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.947	2.45e-141	0.734	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

256728_at : AT3G25660
GO:0017068:glutamyl-tRNA(Gln) amidotransferase activity
GO:0006412:protein biosynthesis
GO:0004040:amidase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.47	8.42e-108	0.634	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.601	1.61e-96	0.593	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.38	3.77e-110	0.642	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.18	2.09e-187	0.828	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248075_at : AT5G55740
GO:0006259:DNA metabolism
GO:0004527:exonuclease activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.383	2.23e-96	0.592	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.524	1.2e-107	0.634	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.13	8.85e-100	0.605	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.945	2.54e-146	0.746	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245985_at : AT5G13120
GO:0006457:protein folding
GO:0003755:peptidyl-prolyl cis-trans isomerase activity
GO:0009543:thylakoid lumen (sensu Viridiplantae)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.633	1.53e-114	0.657	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.79	2.65e-94	0.584	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.79	1.07e-102	0.616	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.33	3.55e-97	0.595	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245150_at : AT2G47590
GO:0003913:DNA photolyase activity
GO:0008372:cellular component unknown
GO:0006281:DNA repair

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.441	5.92e-115	0.658	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.557	8.83e-99	0.602	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.21	1.33e-93	0.582	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.06	6.05e-164	0.786	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

261307_at : AT1G48520
GO:0006424:glutamyl-tRNA aminoacylation
GO:0005739:mitochondrion
GO:0017068:glutamyl-tRNA(Gln) amidotransferase activity
GO:0016884:carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0016874:ligase activity
GO:0006412:protein biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.549	8.84e-107	0.631	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.696	2.88e-93	0.58	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.57	2.56e-99	0.604	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.34	8.77e-158	0.773	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

267562_at : AT2G39670
GO:0003824:catalytic activity
GO:0005506:iron ion binding
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.412	4.84e-92	0.575	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.574	1.24e-108	0.637	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.21	2.55e-93	0.58	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.954	8.96e-109	0.638	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245368_at : AT4G15510
GO:0015979:photosynthesis
GO:0030095:photosystem II (sensu Viridiplantae)
GO:0009654:oxygen evolving complex
GO:0005509:calcium ion binding
GO:0009543:thylakoid lumen (sensu Viridiplantae)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.405	8.69e-92	0.574	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.552	6.55e-101	0.61	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.32	4.95e-137	0.723	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.04	1.22e-164	0.787	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

250383_at : AT5G11480
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0003924:GTPase activity
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.526	4.46e-102	0.614	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.669	1.88e-90	0.569	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.52	3.97e-100	0.607	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.31	2.44e-167	0.792	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

265076_at : AT1G55490
GO:0006457:protein folding
GO:0051085:chaperone cofactor dependent protein folding
GO:0009627:systemic acquired resistance
GO:0005515:protein binding
GO:0008219:cell death
GO:0005525:GTP binding
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.248	2.85e-90	0.568	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.339	1.95e-99	0.604	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.763	7.59e-107	0.631	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.633	8.38e-154	0.764	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248094_at : AT5G55220
GO:0015031:protein transport
GO:0006457:protein folding
GO:0003755:peptidyl-prolyl cis-trans isomerase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.263	2.02e-100	0.608	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.336	1.01e-89	0.566	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.817	3.16e-125	0.69	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.67	4.85e-180	0.816	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

254444_at : AT4G20960
GO:0016787:hydrolase activity
GO:0009231:riboflavin biosynthesis
GO:0008703:5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0008270:zinc ion binding
GO:0008835:diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.576	3.09e-102	0.614	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.731	1.26e-89	0.565	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.62	1.85e-90	0.569	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.36	2.58e-131	0.708	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

252122_at : AT3G51140
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009706:chloroplast inner membrane

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.628	4.64e-108	0.635	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.793	4.34e-93	0.579	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.73	1.64e-89	0.565	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.43	6.86e-124	0.686	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

253251_at : AT4G34730
GO:0008762:UDP-N-acetylmuramate dehydrogenase activity
GO:0006364:rRNA processing
GO:0003723:RNA binding
GO:0009252:peptidoglycan biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.435	2.53e-89	0.564	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.584	2.06e-93	0.581	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.45	2.74e-144	0.742	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.01	2.3e-107	0.633	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

258475_at : AT3G02660
GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0006437:tyrosyl-tRNA aminoacylation
GO:0004812:tRNA ligase activity
GO:0009058:biosynthesis
GO:0003723:RNA binding
GO:0006418:tRNA aminoacylation for protein translation
GO:0004831:tyrosine-tRNA ligase activity
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.632	3.72e-111	0.646	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.802	3.12e-97	0.596	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.72	3.23e-89	0.564	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.47	5.69e-136	0.72	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

255447_at : AT4G02790
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.361	9.47e-89	0.562	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.481	4.5e-91	0.571	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.1	4.74e-103	0.617	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.872	6.87e-122	0.68	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248339_at : AT5G52520
GO:0005737:cytoplasm
GO:0006435:threonyl-tRNA aminoacylation
GO:0004812:tRNA ligase activity
GO:0006433:prolyl-tRNA aminoacylation
GO:0004829:threonine-tRNA ligase activity
GO:0004827:proline-tRNA ligase activity
GO:0006418:tRNA aminoacylation for protein translation
GO:0006412:protein biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.509	1.11e-88	0.561	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.686	2.42e-94	0.584	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.53	1.06e-98	0.601	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.18	1.48e-104	0.623	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

261540_at : AT1G63610
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.419	2.68e-88	0.56	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.559	3.79e-91	0.572	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.29	1.26e-105	0.627	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.08	8.78e-156	0.768	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

260125_at : AT1G36390
GO:0000774:adenyl-nucleotide exchange factor activity
GO:0042803:protein homodimerization activity
GO:0006457:protein folding
GO:0051087:chaperone binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.439	2.71e-99	0.604	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.559	3.67e-88	0.559	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.28	4.88e-99	0.603	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.07	1.01e-144	0.743	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

256678_at : AT3G52380
GO:0006397:mRNA processing
GO:0003723:RNA binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.342	8.57e-93	0.578	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.444	6.51e-88	0.558	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.12	3.17e-140	0.731	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.904	7.73e-193	0.837	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

261206_at : AT1G12800
GO:0005840:ribosome
GO:0005634:nucleus
GO:0008270:zinc ion binding
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0004332:fructose-bisphosphate aldolase activity
GO:0003677:DNA binding
GO:0006096:glycolysis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.301	9.01e-88	0.558	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.418	1.81e-102	0.615	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.04	9.2e-161	0.779	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.812	2.32e-195	0.841	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

247098_at : AT5G66470
GO:0016151:nickel ion binding
GO:0007264:small GTPase mediated signal transduction
GO:0006461:protein complex assembly
GO:0003924:GTPase activity
GO:0003676:nucleic acid binding
GO:0006400:tRNA modification
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0005524:ATP binding
GO:0005525:GTP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.396	7.84e-89	0.562	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.52	2.89e-87	0.556	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.19	3.7e-99	0.603	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.03	3.94e-166	0.79	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

259013_at : AT3G07430
GO:0000004:biological process unknown
GO:0016020:membrane
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.463	4.26e-112	0.649	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.612	2.32e-111	0.646	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
262841_at AT1G14810	0.52	2.99e-89	0.564	step: aspartate-semialdehyde dehydrogenase GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0005739:mitochondrion GO:0006526:arginine biosynthesis GO:0009088:threonine biosynthesis GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity
248402_at AT5G52100	0.942	5.05e-87	0.555	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

257717_at : AT3G18390
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.306	1.13e-110	0.644	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.376	5.45e-87	0.554	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.906	2.75e-116	0.663	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.751	3.15e-171	0.8	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

264177_at : AT1G02150
GO:0005737:cytoplasm
GO:0008119:thiopurine S-methyltransferase activity
GO:0008152:metabolism
GO:0005509:calcium ion binding
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.432	3.08e-100	0.607	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.545	6.67e-87	0.554	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.32	6.86e-117	0.665	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.08	2.63e-167	0.792	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

257856_at : AT3G12930
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.385	3.26e-114	0.656	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.468	7.82e-87	0.554	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.09	1.09e-104	0.623	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.931	5.37e-168	0.794	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

252318_at : AT3G48730
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.307	1.67e-98	0.601	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.39	8.31e-87	0.554	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.983	1.29e-137	0.725	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.777	1.31e-168	0.795	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

246237_at : AT4G36390
GO:0003824:catalytic activity
GO:0005506:iron ion binding
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.478	1.14e-86	0.553	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.669	9.22e-104	0.62	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.65	1.02e-161	0.781	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.22	8.91e-147	0.748	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

252001_at : AT3G52750
GO:0051258:protein polymerization
GO:0005975:carbohydrate metabolism
GO:0009570:chloroplast stroma
GO:0003924:GTPase activity
GO:0005198:structural molecule activity
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.406	1.85e-103	0.619	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.506	3.6e-86	0.551	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.13	4.78e-89	0.563	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.981	2.33e-147	0.749	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

262086_at : AT1G56050
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.398	1.31e-118	0.67	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.531	5.44e-123	0.683	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.05	8.74e-86	0.549	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.865	4.68e-114	0.655	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

251193_at : AT3G62910
GO:0005737:cytoplasm
GO:0016149:translation release factor activity, codon specific
GO:0009658:chloroplast organization and biogenesis
GO:0006415:translational termination
GO:0003747:translation release factor activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.353	1.1e-85	0.549	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.477	4.64e-92	0.575	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.13	6.34e-115	0.658	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.925	8.37e-162	0.781	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

257533_at : AT3G10840
GO:0005737:cytoplasm
GO:0016787:hydrolase activity
GO:0004414:homoserine O-acetyltransferase activity
GO:0016804:prolyl aminopeptidase activity
GO:0016788:hydrolase activity, acting on ester bonds
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0008152:metabolism
GO:0009086:methionine biosynthesis
GO:0009102:biotin biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.352	2.39e-85	0.547	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.469	2.09e-87	0.556	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.04	1.89e-89	0.565	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.886	3.99e-135	0.718	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

250371_at : AT5G11450
GO:0015979:photosynthesis
GO:0005509:calcium ion binding
GO:0009543:thylakoid lumen (sensu Viridiplantae)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.343	5.36e-92	0.575	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.443	2.42e-85	0.547	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.09	2.33e-123	0.685	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.912	3.65e-195	0.841	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

262648_at : AT1G14030
GO:0015986:ATP synthesis coupled proton transport
GO:0046933:hydrogen-transporting ATP synthase activity, rotational mechanism
GO:0046961:hydrogen-transporting ATPase activity, rotational mechanism
GO:0030785:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
GO:0016469:hydrogen-transporting two-sector ATPase complex
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.374	2.12e-97	0.596	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.474	3.16e-85	0.547	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.15	4.42e-115	0.659	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.992	1.61e-213	0.866	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

246019_at : AT5G10690
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.399	4.27e-100	0.607	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.501	6.79e-85	0.545	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.14	1.14e-94	0.586	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.02	5.39e-180	0.816	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

266509_at : AT2G47940
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004252:serine-type endopeptidase activity
GO:0004295:trypsin activity
GO:0010206:photosystem II repair
GO:0009533:chloroplast stromal thylakoid
GO:0006508:proteolysis and peptidolysis
GO:0008236:serine-type peptidase activity

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.356	5.83e-110	0.642	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.433	1.11e-84	0.544	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.1	5.35e-139	0.728	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.912	1.22e-218	0.873	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

257903_at : AT3G28460
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.469	7.99e-111	0.645	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.569	1.23e-84	0.544	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.26	1.64e-86	0.552	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.09	2.23e-136	0.721	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

258554_at : AT3G06980
GO:0000004:biological process unknown
GO:0008026:ATP-dependent helicase activity
GO:0004386:helicase activity
GO:0003676:nucleic acid binding
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.408	2.34e-84	0.543	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.561	8.11e-95	0.586	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.2	1.27e-86	0.553	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.01	2.16e-125	0.691	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248920_at : AT5G45930
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.293	2.46e-93	0.58	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.375	2.79e-84	0.543	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.973	4.74e-149	0.753	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.77	2.5e-187	0.828	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

247376_at : AT5G63310
GO:0005737:cytoplasm
GO:0005634:nucleus
GO:0004550:nucleoside diphosphate kinase activity
GO:0005524:ATP binding
GO:0042542:response to hydrogen peroxide

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.321	2.75e-105	0.625	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.395	1.16e-83	0.54	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.975	5.76e-121	0.677	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.812	3.42e-186	0.826	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

266863_at : AT2G26930
GO:0005737:cytoplasm
GO:0006566:threonine metabolism
GO:0004496:mevalonate kinase activity
GO:0016310:phosphorylation
GO:0016301:kinase activity
GO:0004413:homoserine kinase activity
GO:0009058:biosynthesis
GO:0016114:terpenoid biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.654	2.76e-88	0.56	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.875	1.11e-91	0.574	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.87	1.68e-83	0.539	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.56	3.99e-116	0.662	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

264698_at : AT1G70200
GO:0005634:nucleus
GO:0006950:response to stress
GO:0008270:zinc ion binding
GO:0003676:nucleic acid binding
GO:0009415:response to water
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.329	2.43e-84	0.543	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.434	1.48e-83	0.54	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	0.981	2.61e-90	0.568	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.849	3.32e-147	0.749	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248688_at : AT5G48220
GO:0000162:tryptophan biosynthesis
GO:0004425:indole-3-glycerol-phosphate synthase activity

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.408	2.04e-83	0.539	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.55	3.19e-88	0.56	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.28	8.62e-104	0.62	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.05	4.86e-144	0.741	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

250146_at : AT5G14660
GO:0004450:isocitrate dehydrogenase (NADP+) activity
GO:0006099:tricarboxylic acid cycle
GO:0042586:peptide deformylase activity
GO:0005506:iron ion binding
GO:0006412:protein biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.363	5.31e-83	0.537	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.501	1.81e-94	0.585	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.27	1.1e-156	0.77	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.934	3.27e-141	0.734	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

259715_at : AT1G60990
GO:0005737:cytoplasm
GO:0004047:aminomethyltransferase activity
GO:0019464:glycine decarboxylation via glycine cleavage system
GO:0006546:glycine catabolism
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.758	6.29e-83	0.537	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	1.05	1.67e-95	0.589	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	2.34	7.55e-100	0.606	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.83	2.22e-112	0.65	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

251573_at : AT3G58140
GO:0005737:cytoplasm
GO:0004826:phenylalanine-tRNA ligase activity
GO:0004812:tRNA ligase activity
GO:0006432:phenylalanyl-tRNA aminoacylation
GO:0006418:tRNA aminoacylation for protein translation
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.609	1.73e-105	0.626	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.745	9.06e-83	0.536	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.91	2.23e-137	0.724	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.47	7.75e-150	0.755	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

261622_at : AT1G01970
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.497	9.42e-83	0.536	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.692	1.52e-96	0.593	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.58	3.72e-108	0.636	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.29	1.19e-146	0.747	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

258534_at : AT3G06730
GO:0016853:isomerase activity
GO:0017004:cytochrome complex assembly
GO:0030508:thiol-disulfide exchange intermediate activity
GO:0005489:electron transporter activity
GO:0009507:chloroplast
GO:0006118:electron transport
GO:0015036:disulfide oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.328	1.79e-85	0.548	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.428	6.04e-82	0.533	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1	4.76e-99	0.603	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.833	2.8e-139	0.729	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

251172_at : AT3G63190
GO:0005554:molecular function unknown
GO:0006412:protein biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.373	2.71e-118	0.669	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.439	2.41e-81	0.53	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.11	1.3e-128	0.7	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.901	3.75e-175	0.807	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

267578_at : AT2G30695
GO:0015031:protein transport
GO:0005554:molecular function unknown
GO:0006457:protein folding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.386	4.1e-105	0.625	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.47	2.46e-81	0.53	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.07	9.86e-90	0.566	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.949	2.2e-162	0.782	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

264963_at : AT1G60600
GO:0005737:cytoplasm
GO:0004659:prenyltransferase activity
GO:0016021:integral to membrane
GO:0008415:acyltransferase activity
GO:0005739:mitochondrion
GO:0016740:transferase activity
GO:0019281:methionine biosynthesis from homoserine via O-succinyl-L-homoserine and cystathione
GO:0009234:menaquinone biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.42	7.43e-109	0.638	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.22	6.13e-107	0.631	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.05	8.81e-183	0.821	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

267549_at : AT2G32640
GO:0016117:carotenoid biosynthesis
GO:0016705:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254535_at AT4G19710	0.628	8.34e-106	0.627	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.47	7.78e-133	0.712	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.1	6.09e-130	0.704	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

266608_at : AT2G35500
GO:0016089:aromatic amino acid family biosynthesis, shikimate pathway
GO:0004765:shikimate kinase activity
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.379	3.14e-103	0.618	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.17	4.02e-125	0.69	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.962	1.53e-185	0.825	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248235_at : AT5G53860
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.56	4.26e-103	0.618	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.64	1.89e-105	0.626	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.37	5.07e-154	0.764	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245790_at : AT1G32200
GO:0004366:glycerol-3-phosphate O-acyltransferase activity
GO:0009536:plastid
GO:0019432:triacylglycerol biosynthesis
GO:0008152:metabolism
GO:0006654:phosphatidic acid biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254535_at AT4G19710	0.62	2.54e-102	0.615	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.41	6.85e-113	0.652	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.1	1.49e-129	0.703	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

249993_at : AT5G18570
GO:0008121:ubiquinol-cytochrome-c reductase activity
GO:0006122:mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005524:ATP binding
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0006118:electron transport
GO:0005525:GTP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.491	6.33e-103	0.617	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.647	5.26e-102	0.614	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
248402_at AT5G52100	1.16	1.56e-131	0.708	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

252922_at : AT4G39040
GO:0005634:nucleus
GO:0000004:biological process unknown
GO:0003676:nucleic acid binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.331	6.59e-101	0.61	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1	3.99e-116	0.662	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.854	4.03e-196	0.842	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245357_at : AT4G17560
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.278	8.36e-100	0.605	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.9	2.68e-147	0.749	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.729	1.55e-210	0.862	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

259344_at : AT3G03710
GO:0004549:tRNA-specific ribonuclease activity
GO:0000049:tRNA binding
GO:0008033:tRNA processing
GO:0005840:ribosome
GO:0000175:3'-5'-exoribonuclease activity
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0003676:nucleic acid binding
GO:0006412:protein biosynthesis
GO:0006396:RNA processing
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.438	3.67e-107	0.632	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.565	2.85e-98	0.6	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
248402_at AT5G52100	0.982	1.98e-114	0.657	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

248798_at : AT5G47190
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.309	5.18e-98	0.599	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.998	5.85e-141	0.733	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.813	2.72e-205	0.855	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

257219_at : AT3G14930
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.351	5.16e-97	0.595	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.06	5.62e-110	0.642	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.902	5.04e-178	0.812	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

254485_at : AT4G20760
GO:0006729:tetrahydrobiopterin biosynthesis
GO:0015995:chlorophyll biosynthesis
GO:0019685:photosynthesis, dark reaction
GO:0016630:protochlorophyllide reductase activity
GO:0005739:mitochondrion
GO:0008152:metabolism
GO:0009507:chloroplast
GO:0004757:sepiapterin reductase activity
GO:0016491:oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.5	3.05e-98	0.6	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.45	7.55e-97	0.594	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.27	2.84e-168	0.794	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

249929_at : AT5G22340
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.392	8.69e-97	0.594	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.14	3.76e-97	0.595	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1	9.41e-171	0.799	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

250884_at : AT5G03940
GO:0005786:signal recognition particle (sensu Eukaryota)
GO:0005048:signal sequence binding
GO:0009570:chloroplast stroma
GO:0006617:SRP-dependent cotranslational protein-membrane targeting, signal sequence recognition
GO:0045038:chloroplast thylakoid membrane protein import
GO:0008312:7S RNA binding
GO:0005525:GTP binding
GO:0003729:mRNA binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.28	1.27e-96	0.593	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.873	3.7e-121	0.678	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.734	2.26e-196	0.842	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

255691_at : AT4G00370
GO:0006810:transport
GO:0008514:organic anion transporter activity
GO:0006817:phosphate transport
GO:0016021:integral to membrane
GO:0016020:membrane
GO:0009539:photosystem II reaction center
GO:0008643:carbohydrate transport
GO:0015698:inorganic anion transport
GO:0015979:photosynthesis
GO:0006118:electron transport
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254535_at AT4G19710	0.527	1.67e-96	0.593	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.3	1.01e-143	0.74	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.91	1.43e-109	0.64	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

254117_at : AT4G24750
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.397	9.84e-96	0.59	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.19	6.78e-105	0.624	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.05	1.79e-203	0.853	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245165_at : AT2G33180
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.256	2.18e-95	0.589	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.826	5.45e-136	0.72	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.641	5.19e-153	0.762	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

253233_at : AT4G34290
GO:0005634:nucleus
GO:0005554:molecular function unknown
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.308	2.04e-98	0.6	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
254535_at AT4G19710	0.403	3.18e-95	0.588	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
248402_at AT5G52100	0.682	1.28e-100	0.609	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

250006_at : AT5G18660
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.223	5.39e-95	0.587	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.696	2.66e-120	0.675	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.557	5.54e-152	0.76	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

266521_at : AT2G24020
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.41	5.55e-95	0.587	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.31	4.28e-132	0.71	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.05	2.62e-169	0.796	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

245118_at : AT2G41680
GO:0005489:electron transporter activity
GO:0015979:photosynthesis
GO:0008236:serine-type peptidase activity
GO:0005737:cytoplasm
GO:0015995:chlorophyll biosynthesis
GO:0004362:glutathione-disulfide reductase activity
GO:0045550:geranylgeranyl reductase activity
GO:0006749:glutathione metabolism
GO:0004148:dihydrolipoyl dehydrogenase activity
GO:0006508:proteolysis and peptidolysis
GO:0016491:oxidoreductase activity
GO:0006118:electron transport
GO:0050660:FAD binding
GO:0045454:cell redox homeostasis
GO:0009507:chloroplast
GO:0016853:isomerase activity
GO:0016639:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0016654:oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor
GO:0019430:removal of superoxide radicals
GO:0006537:glutamate biosynthesis
GO:0004791:thioredoxin-disulfide reductase activity
GO:0015036:disulfide oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
254535_at AT4G19710	0.437	2.45e-94	0.584	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.13	6.39e-175	0.807	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.836	9.07e-158	0.773	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

264018_at : AT2G21170
GO:0008152:metabolism
GO:0019253:reductive pentose-phosphate cycle
GO:0004807:triose-phosphate isomerase activity
GO:0005739:mitochondrion
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.565	8.61e-94	0.582	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.71	8.76e-106	0.627	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.3	6.97e-109	0.638	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

255623_at : AT4G01310
GO:0003735:structural constituent of ribosome
GO:0005622:intracellular
GO:0005840:ribosome
GO:0006412:protein biosynthesis
GO:0005842:cytosolic large ribosomal subunit (sensu Eukaryota)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.275	1.01e-93	0.582	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	0.911	5.34e-149	0.753	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.724	8.07e-192	0.836	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

261577_at : AT1G01080
GO:0000004:biological process unknown
GO:0003723:RNA binding
GO:0003676:nucleic acid binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.356	1.6e-93	0.581	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.19	1.81e-153	0.763	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.959	9.49e-220	0.874	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

247400_at : AT5G62840
GO:0008969:phosphohistidine phosphatase activity
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254535_at AT4G19710	0.611	1.97e-93	0.581	step: aspartate kinase GO:0004812:tRNA ligase activity GO:0004412:homoserine dehydrogenase activity GO:0009067:aspartate family amino acid biosynthesis GO:0016597:amino acid binding GO:0004072:aspartate kinase activity GO:0005524:ATP binding
253197_at AT4G35250	1.45	2.06e-120	0.676	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.16	9.31e-154	0.764	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

254502_at : AT4G20130
GO:0008175:tRNA methyltransferase activity
GO:0008033:tRNA processing
GO:0003723:RNA binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.383	3.14e-106	0.629	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.07	3.59e-93	0.58	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	0.945	1.74e-167	0.793	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

260388_at : AT1G74070
GO:0006457:protein folding
GO:0003755:peptidyl-prolyl cis-trans isomerase activity
GO:0009543:thylakoid lumen (sensu Viridiplantae)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.397	1.06e-92	0.578	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
253197_at AT4G35250	1.19	1.03e-102	0.616	step: 3-beta-hydroxy-delta5-steroid dehydrogenase GO:0016491:oxidoreductase activity GO:0045226:extracellular polysaccharide biosynthesis GO:0004043:L-aminoadipate-semialdehyde dehydrogenase activity GO:0006012:galactose metabolism GO:0008152:metabolism GO:0003824:catalytic activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0006694:steroid biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003854:3-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003978:UDP-glucose 4-epimerase activity GO:0008831:dTDP-4-dehydrorhamnose reductase activity GO:0009507:chloroplast
248402_at AT5G52100	1.01	3.94e-160	0.778	step: dihydrodipicolinate reductase GO:0009089:lysine biosynthesis via diaminopimelate GO:0008839:dihydrodipicolinate reductase activity GO:0009507:chloroplast

256862_at : AT3G23940
GO:0004160:dihydroxy-acid dehydratase activity
GO:0009255:Entner-Doudoroff pathway
GO:0009099:valine biosynthesis
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0004456:phosphogluconate dehydratase activity
GO:0009097:isoleucine biosynthesis
GO:0009507:chloroplast
GO:0009082:branched chain family amino acid biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
245145_at AT2G45440	0.625	1.11e-92	0.578	step: dihydrodipicolinate synthase GO:0008840:dihydrodipicolinate synthase activity GO:0009089:lysine biosynthesis via diaminopimelate GO:0009507:chloroplast
262841_at AT1G14810	0.607	2.91e-128	0.699	step: aspartate-semialdehyde dehydro