University of Alabama at Birmingham Section on Statistical Genetics School of Public Health Department of Biostatistics

PCL results for AraCyc pathway: chlorophyll biosynthesis

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank probe set:gene id co-expressed with
1 251120_at : AT3G63490
GO:0005179:hormone activity
GO:0015934:large ribosomal subunit
GO:0005840:ribosome
GO:0005739:mitochondrion
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0005576:extracellular region
GO:0003723:RNA binding
GO:0006412:protein biosynthesis
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.479 9.91e-167 0.791 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.942 1.89e-188 0.83 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.772 2.69e-161 0.78 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.924 5.85e-221 0.875 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.845 1.45e-182 0.82 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.853 2.05e-93 0.581 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.44 7.44e-181 0.817 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.26 1.57e-257 0.912 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.406 6.52e-99 0.602 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		1.01 6.04e-107 0.631 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.865 8.28e-201 0.849 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.858 3.27e-232 0.888 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.39 1.63e-206 0.857 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.932 1.36e-209 0.861 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.743 3.62e-103 0.618 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.458 1.08e-100 0.609 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
2 252032_at : AT3G52150
GO:0008152:metabolism
GO:0016740:transferase activity
GO:0003723:RNA binding
GO:0003676:nucleic acid binding
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.376 2.71e-165 0.788 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.761 4.71e-219 0.873 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.61 4.37e-164 0.786 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.732 2.53e-232 0.888 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.681 1.12e-209 0.861 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.666 4.29e-91 0.571 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.13 3.03e-177 0.811 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.01 0 0.949 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.32 7.84e-99 0.602 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		0.804 1.05e-110 0.644 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.692 5.28e-223 0.878 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.684 8.68e-257 0.911 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.1 4.88e-223 0.878 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.751 1.17e-246 0.902 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.575 1.02e-97 0.598 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.352 5.96e-93 0.579 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
3 255440_at : AT4G02530
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009543:thylakoid lumen (sensu Viridiplantae)
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.392 4.32e-176 0.809 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.766 1.23e-193 0.838 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.614 7.15e-150 0.755 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.744 2.13e-214 0.867 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.685 7.66e-185 0.824 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.682 3.85e-90 0.568 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.15 1.09e-173 0.805 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.01 1.43e-235 0.892 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.327 6.76e-98 0.598 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		0.783 1.18e-92 0.578 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.695 2.9e-194 0.839 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.684 1.79e-212 0.865 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.14 8.19e-231 0.886 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.74 7.39e-189 0.831 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.613 2.07e-110 0.643 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.362 1.8e-93 0.581 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
4 253758_at : AT4G29060
GO:0005840:ribosome
GO:0003700:transcription factor activity
GO:0005634:nucleus
GO:0006289:nucleotide-excision repair
GO:0003735:structural constituent of ribosome
GO:0045449:regulation of transcription
GO:0003723:RNA binding
GO:0003677:DNA binding
GO:0003746:translation elongation factor activity
GO:0006414:translational elongation
GO:0006412:protein biosynthesis
GO:0009507:chloroplast
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.387 3.5e-172 0.802 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.767 7.34e-203 0.852 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.608 4.85e-147 0.748 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.757 1.17e-255 0.91 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.68 2.93e-184 0.823 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.679 1.82e-90 0.569 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.14 4.22e-173 0.803 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.03 0 0.938 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.328 1.6e-100 0.608 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		0.782 2.9e-94 0.584 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.684 1.27e-183 0.822 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.686 1.19e-225 0.881 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.13 4.56e-222 0.877 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.77 1.03e-254 0.91 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.593 2.49e-100 0.607 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.352 1.01e-87 0.557 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
5 266570_at : AT2G24090
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.49 2.62e-177 0.811 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.994 1.88e-246 0.902 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.785 3.11e-164 0.786 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.937 2.6e-224 0.879 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.881 4.72e-217 0.871 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.861 7.28e-93 0.579 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.42 6.05e-161 0.779 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.29 1.47e-278 0.928 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.406 1.64e-95 0.589 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		1.01 1.71e-101 0.612 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.886 1.96e-217 0.871 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.871 8.84e-239 0.895 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.41 6.24e-215 0.868 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.957 1.6e-231 0.887 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.753 9.48e-104 0.62 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.442 1.03e-86 0.553 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
6 261190_at : AT1G32990
GO:0005840:ribosome
GO:0006412:protein biosynthesis
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0005622:intracellular
GO:0009282:cytosolic large ribosomal subunit (sensu Bacteria)
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.448 1.62e-173 0.804 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.898 7.16e-221 0.875 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.727 5.92e-172 0.801 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.855 2.68e-217 0.871 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.803 4.74e-208 0.859 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.772 1.26e-86 0.553 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.3 2.39e-161 0.78 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.18 1.03e-261 0.915 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.38 1.93e-101 0.612 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		0.958 8.32e-115 0.658 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.815 1.69e-222 0.877 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.811 8.31e-270 0.922 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.3 3.5e-222 0.877 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.875 7.86e-227 0.882 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.671 3.1e-94 0.584 step: glutamyl-tRNA reductase
GO:0015995:chlorophyll biosynthesis
GO:0006783:heme biosynthesis
GO:0008883:glutamyl-tRNA reductase activity
GO:0006779:porphyrin biosynthesis
GO:0009416:response to light
GO:0009507:chloroplast
260370_at
AT1G69740 		0.416 3.51e-94 0.584 step: porphobilinogen synthase
GO:0004655:porphobilinogen synthase activity
GO:0006779:porphyrin biosynthesis
GO:0009507:chloroplast
7 255623_at : AT4G01310
GO:0003735:structural constituent of ribosome
GO:0005622:intracellular
GO:0005840:ribosome
GO:0006412:protein biosynthesis
GO:0005842:cytosolic large ribosomal subunit (sensu Eukaryota)
probe set,gene slope pvalue rsquared annotations
255537_at
AT4G01690 		0.428 6.22e-157 0.771 step: protoporphyrinogen oxidase
GO:0004729:protoporphyrinogen oxidase activity
GO:0005739:mitochondrion
GO:0006779:porphyrin biosynthesis
248920_at
AT5G45930 		0.865 9.08e-204 0.853 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0016851:magnesium chelatase activity
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
257219_at
AT3G14930 		0.7 5.19e-162 0.782 step: methyltransferase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0005739:mitochondrion
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
246308_at
AT3G51820 		0.821 1.3e-197 0.844 step: chlorophyll synthetase
GO:0009535:thylakoid membrane (sensu Viridiplantae)
GO:0004659:prenyltransferase activity
GO:0006783:heme biosynthesis
GO:0009234:menaquinone biosynthesis
GO:0009058:biosynthesis
GO:0016740:transferase activity
GO:0008495:protoheme IX farnesyltransferase activity
255826_at
AT2G40490 		0.766 1.21e-183 0.822 step: uroporphyrinogen decarboxylase
GO:0008168:methyltransferase activity
GO:0006779:porphyrin biosynthesis
GO:0004853:uroporphyrinogen decarboxylase activity
GO:0009507:chloroplast
245242_at
AT1G44446 		0.752 2.26e-86 0.552 step: chlorophyll a oxygenase
GO:0046407:chlorophyll a oxygenase activity
GO:0015995:chlorophyll biosynthesis
GO:0016630:protochlorophyllide reductase activity
GO:0009507:chloroplast
250243_at
AT5G13630 		1.25 1.15e-151 0.759 step: Mg chelatase
GO:0009058:biosynthesis
GO:0009706:chloroplast inner membrane
GO:0019478:D-amino acid catabolism
GO:0005739:mitochondrion
GO:0016851:magnesium chelatase activity
254623_at
AT4G18480 		1.14 9.69e-255 0.91 step: Mg chelatase
GO:0010007:magnesium chelatase complex
GO:0009570:chloroplast stroma
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016851:magnesium chelatase activity
247392_at
AT5G63570 		0.371 7.15e-102 0.613 step: glutamate-1-semialdehyde 2,1-aminomutase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0009416:response to light
GO:0006779:porphyrin biosynthesis
253871_at
AT4G27440 		0.917 1.36e-107 0.634 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
246033_at
AT5G08280 		0.779 1.76e-196 0.843 step: hydroxymethylbilane synthase
GO:0006779:porphyrin biosynthesis
GO:0004418:hydroxymethylbilane synthase activity
GO:0009507:chloroplast
261695_at
AT1G08520 		0.77 5.03e-221 0.875 step: Mg chelatase
GO:0015995:chlorophyll biosynthesis
GO:0016851:magnesium chelatase activity
264839_at
AT1G03630 		1.22 7.52e-178 0.812 step: protochlorophyllide reductase
GO:0015995:chlorophyll biosynthesis
GO:0009507:chloroplast
GO:0016630:protochlorophyllide reductase activity
GO:0016491:oxidoreductase activity
252318_at
AT3G48730 		0.859 5.8e-239 0.895 step: 4-aminobutyrate transaminase
GO:0005737:cytoplasm
GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity
GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0006779:porphyrin biosynthesis
GO:0008483:transaminase activity
GO:0030170:pyridoxal phosphate binding
GO:0016769:transferase activity, transferring nitrogenous groups
GO:0003867:4-aminobutyrate transaminase activity
GO:0009507:chloroplast
256020_at
AT1G58290 		0.644 8.97e-90 0.566 step: g