PCL results for AraCyc pathway: arginine biosynthesis I

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-80. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank

probe set:gene id

co-expressed with

251599_at : AT3G57610
GO:0004019:adenylosuccinate synthase activity
GO:0006164:purine nucleotide biosynthesis
GO:0005525:GTP binding
GO:0009152:purine ribonucleotide biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251639_at AT3G57560	0.847	2.22e-93	0.581	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	1.01	7.27e-88	0.558	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.719	7.75e-82	0.532	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity
265965_at AT2G37500	0.678	1.04e-90	0.57	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
260286_at AT1G80600	0.855	9.62e-82	0.532	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
254134_at AT4G24830	1.03	1.02e-87	0.557	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

256862_at : AT3G23940
GO:0004160:dihydroxy-acid dehydratase activity
GO:0009255:Entner-Doudoroff pathway
GO:0009099:valine biosynthesis
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0004456:phosphogluconate dehydratase activity
GO:0009097:isoleucine biosynthesis
GO:0009507:chloroplast
GO:0009082:branched chain family amino acid biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.683	5.71e-122	0.68	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
265965_at AT2G37500	0.397	2.21e-84	0.543	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	0.521	1.41e-101	0.612	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.717	1.09e-164	0.787	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.472	5.81e-109	0.638	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

258243_at : AT3G27740
GO:0005737:cytoplasm
GO:0006207:'de novo' pyrimidine base biosynthesis
GO:0003922:GMP synthase (glutamine-hydrolyzing) activity
GO:0006526:arginine biosynthesis
GO:0004049:anthranilate synthase activity
GO:0003824:catalytic activity
GO:0009058:biosynthesis
GO:0006807:nitrogen compound metabolism
GO:0004086:carbamoyl-phosphate synthase activity
GO:0008152:metabolism
GO:0016763:transferase activity, transferring pentosyl groups
GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0006177:GMP biosynthesis
GO:0000105:histidine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.18	4.65e-126	0.693	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	0.888	7.83e-99	0.602	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	1.15	7.04e-126	0.692	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.951	2.08e-126	0.694	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

262937_at : AT1G79560
GO:0004176:ATP-dependent peptidase activity
GO:0006310:DNA recombination
GO:0005975:carbohydrate metabolism
GO:0006281:DNA repair
GO:0030163:protein catabolism
GO:0016887:ATPase activity
GO:0006508:proteolysis and peptidolysis
GO:0008237:metallopeptidase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.462	1.55e-90	0.569	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.515	9.04e-93	0.578	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.619	4.92e-90	0.567	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
265965_at AT2G37500	0.444	8.5e-115	0.658	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

251083_at : AT5G01590
GO:0009941:chloroplast envelope
GO:0000004:biological process unknown
GO:0005554:molecular function unknown

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.416	4.39e-119	0.672	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.448	7.54e-109	0.638	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.476	6.61e-112	0.648	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.34	3.69e-89	0.563	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

255053_at : AT4G09730
GO:0006310:DNA recombination
GO:0009432:SOS response
GO:0008026:ATP-dependent helicase activity
GO:0004003:ATP-dependent DNA helicase activity
GO:0005739:mitochondrion
GO:0004386:helicase activity
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0003774:motor activity
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.48	2.48e-95	0.588	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.563	1.01e-116	0.664	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.545	4.7e-88	0.559	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.433	1.14e-98	0.601	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

259344_at : AT3G03710
GO:0004549:tRNA-specific ribonuclease activity
GO:0000049:tRNA binding
GO:0008033:tRNA processing
GO:0005840:ribosome
GO:0000175:3'-5'-exoribonuclease activity
GO:0003735:structural constituent of ribosome
GO:0003723:RNA binding
GO:0003676:nucleic acid binding
GO:0006412:protein biosynthesis
GO:0006396:RNA processing
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.438	3.67e-107	0.632	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.494	5.89e-115	0.658	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.478	1.15e-86	0.553	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.375	1.34e-93	0.582	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

267421_at : AT2G35040
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.779	1.36e-115	0.66	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	0.572	1.09e-85	0.549	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.797	1.88e-137	0.724	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.53	1.28e-98	0.601	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

257717_at : AT3G18390
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.306	1.13e-110	0.644	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.313	3.25e-86	0.551	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.336	1.15e-90	0.57	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.25	1.05e-82	0.536	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

260292_at : AT1G63680
GO:0005737:cytoplasm
GO:0008766:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
GO:0008764:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
GO:0008763:UDP-N-acetylmuramate-L-alanine ligase activity
GO:0004326:tetrahydrofolylpolyglutamate synthase activity
GO:0016881:acid-amino acid ligase activity
GO:0009058:biosynthesis
GO:0009396:folic acid and derivative biosynthesis
GO:0009089:lysine biosynthesis via diaminopimelate
GO:0007047:cell wall organization and biogenesis
GO:0008839:dihydrodipicolinate reductase activity
GO:0016874:ligase activity
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.481	1.85e-90	0.569	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.587	1.63e-126	0.694	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.625	1.55e-82	0.535	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
265965_at AT2G37500	0.43	6.33e-91	0.571	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

261882_at : AT1G80770
GO:0006400:tRNA modification
GO:0005525:GTP binding
GO:0003924:GTPase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.512	6.69e-91	0.571	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.58	2.05e-98	0.6	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.579	6.97e-83	0.537	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.441	2.09e-81	0.53	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

253233_at : AT4G34290
GO:0005634:nucleus
GO:0005554:molecular function unknown
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.308	2.04e-98	0.6	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.347	2.76e-105	0.625	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.388	3.08e-81	0.529	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
265965_at AT2G37500	0.26	7.97e-83	0.536	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

252492_at : AT3G46740
GO:0009658:chloroplast organization and biogenesis
GO:0010006:toc complex
GO:0015450:protein translocase activity
GO:0004478:methionine adenosyltransferase activity
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.696	5.36e-81	0.528	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
265965_at AT2G37500	0.459	5.81e-84	0.541	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	0.637	1.56e-122	0.682	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.744	3.44e-107	0.632	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

245150_at : AT2G47590
GO:0003913:DNA photolyase activity
GO:0008372:cellular component unknown
GO:0006281:DNA repair

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.441	5.92e-115	0.658	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.436	5.47e-81	0.528	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.46	6.67e-81	0.528	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity
265965_at AT2G37500	0.363	1.4e-88	0.561	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

253921_at : AT4G26900
GO:0000107:imidazoleglycerol phosphate synthase activity
GO:0000105:histidine biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.881	3.37e-114	0.656	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.911	1.53e-141	0.735	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.604	9.82e-100	0.605	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

251958_at : AT3G53560
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009543:thylakoid lumen (sensu Viridiplantae)

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.396	4.79e-104	0.621	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.426	1.8e-95	0.589	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.453	1.33e-97	0.597	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

250061_at : AT5G17710
GO:0000774:adenyl-nucleotide exchange factor activity
GO:0042803:protein homodimerization activity
GO:0006457:protein folding
GO:0051087:chaperone binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.442	3.74e-103	0.618	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.476	7.28e-95	0.586	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.504	6.51e-96	0.591	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

245914_at : AT5G19620
GO:0009941:chloroplast envelope
GO:0006886:intracellular protein transport
GO:0015450:protein translocase activity

probe set,gene	slope	pvalue	rsquared	annotations
265965_at AT2G37500	0.885	3.34e-93	0.58	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	1.14	2.54e-105	0.626	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	1.38	8.19e-106	0.627	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

262086_at : AT1G56050
GO:0000004:biological process unknown
GO:0005525:GTP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.398	1.31e-118	0.67	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.42	2.54e-101	0.611	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.33	9.16e-93	0.578	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

249993_at : AT5G18570
GO:0008121:ubiquinol-cytochrome-c reductase activity
GO:0006122:mitochondrial electron transport, ubiquinol to cytochrome c
GO:0005524:ATP binding
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0006118:electron transport
GO:0005525:GTP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.491	6.33e-103	0.617	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.538	4.32e-100	0.607	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.423	5.08e-92	0.575	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

251920_at : AT3G53900
GO:0004845:uracil phosphoribosyltransferase activity
GO:0006223:uracil salvage
GO:0003999:adenine phosphoribosyltransferase activity
GO:0009116:nucleoside metabolism
GO:0006168:adenine salvage
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.474	4.25e-114	0.656	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.561	3.95e-149	0.753	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.396	1.16e-91	0.574	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

257180_at : AT3G13180
GO:0008649:rRNA methyltransferase activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0008757:S-adenosylmethionine-dependent methyltransferase activity
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006364:rRNA processing
GO:0003723:RNA binding
GO:0009507:chloroplast
GO:0006412:protein biosynthesis
GO:0005840:ribosome

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.494	6.32e-95	0.587	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.54	1.43e-91	0.573	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.443	2.51e-96	0.592	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

263415_at : AT2G17250
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.02	4.47e-104	0.621	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.966	7.15e-95	0.587	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.786	1.91e-91	0.573	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

266889_at : AT2G44640
GO:0009941:chloroplast envelope
GO:0000004:biological process unknown
GO:0005554:molecular function unknown

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.397	2.57e-91	0.572	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.464	2.72e-109	0.639	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.577	3.46e-119	0.672	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

257759_at : AT3G23070
GO:0006355:regulation of transcription, DNA-dependent
GO:0016564:transcriptional repressor activity
GO:0006928:cell motility
GO:0043064:flagellum organization and biogenesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.454	1.79e-98	0.6	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.489	3.34e-91	0.572	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.397	6.55e-92	0.575	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

259013_at : AT3G07430
GO:0000004:biological process unknown
GO:0016020:membrane
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.463	4.26e-112	0.649	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.536	3.23e-132	0.71	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.384	5.61e-88	0.559	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

261711_at : AT1G32700
GO:0004730:pseudouridylate synthase activity
GO:0008033:tRNA processing
GO:0008270:zinc ion binding
GO:0005488:binding
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	-0.562	4.44e-88	0.559	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	-0.48	1.18e-106	0.63	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	-0.55	1.4e-88	0.561	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

254694_at : AT4G17900
GO:0000004:biological process unknown
GO:0008270:zinc ion binding
GO:0005488:binding
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	-0.668	1.35e-87	0.557	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	-0.544	9.7e-91	0.57	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	-0.657	1.2e-89	0.565	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

246762_at : AT5G27620
GO:0006352:transcription initiation
GO:0000074:regulation of progression through cell cycle
GO:0003700:transcription factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0008270:zinc ion binding
GO:0005667:transcription factor complex
GO:0004693:cyclin-dependent protein kinase activity
GO:0007049:cell cycle

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.832	4.38e-90	0.567	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.804	5.9e-87	0.554	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.679	1.95e-94	0.585	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

262738_at : AT1G28530
GO:0000004:biological process unknown
GO:0016887:ATPase activity
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.822	6.59e-87	0.554	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	0.676	1.37e-92	0.577	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.84	5.83e-100	0.606	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

253308_at : AT4G33680
GO:0008483:transaminase activity
GO:0009862:systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.645	2.16e-105	0.626	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.669	1.7e-86	0.552	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.558	2.34e-95	0.588	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

266957_at : AT2G34640
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.282	3.04e-88	0.56	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.313	1.99e-89	0.565	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.25	7.53e-86	0.55	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

258966_at : AT3G10690
GO:0006265:DNA topological change
GO:0005739:mitochondrion
GO:0003824:catalytic activity
GO:0003916:DNA topoisomerase activity
GO:0003677:DNA binding
GO:0006259:DNA metabolism
GO:0006268:DNA unwinding
GO:0003918:DNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.627	9.06e-86	0.549	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
265965_at AT2G37500	0.417	2.07e-91	0.573	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
250403_at AT5G10920	0.721	2.25e-152	0.761	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

260815_at : AT1G06950
GO:0009658:chloroplast organization and biogenesis
GO:0045037:chloroplast stroma protein import
GO:0003774:motor activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
265965_at AT2G37500	0.41	4.25e-92	0.575	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	0.494	3.97e-85	0.546	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.603	1.43e-86	0.553	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

257903_at : AT3G28460
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.469	7.99e-111	0.645	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.525	2.09e-116	0.663	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.383	7.22e-84	0.541	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

253816_at : AT4G28210
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.64	3.78e-96	0.592	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.733	9.41e-108	0.634	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.546	1.21e-83	0.54	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

249826_at : AT5G23310
GO:0019430:removal of superoxide radicals
GO:0008382:iron superoxide dismutase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.325	1.63e-83	0.539	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.372	8.27e-93	0.578	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.438	5.02e-85	0.546	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

245027_at : AT2G26550
GO:0004392:heme oxygenase (decyclizing) activity
GO:0010024:phytochromobilin biosynthesis
GO:0006788:heme oxidation
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.573	1.21e-98	0.601	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.601	7.97e-84	0.541	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.633	1.56e-83	0.54	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

260595_at : AT1G55890
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.84	2.9e-89	0.564	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.845	1.32e-97	0.597	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.586	2.57e-83	0.539	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

250181_at : AT5G14460
GO:0008804:carbamate kinase activity
GO:0008033:tRNA processing
GO:0004730:pseudouridylate synthase activity
GO:0005215:transporter activity
GO:0006525:arginine metabolism
GO:0009451:RNA modification
GO:0006396:RNA processing
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.618	3.55e-98	0.599	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.659	9.06e-88	0.558	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.523	2.59e-83	0.539	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

257891_at : AT3G17170
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.307	1.06e-93	0.582	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.339	8.46e-94	0.582	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.264	3.62e-83	0.538	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

260585_at : AT2G43650
GO:0005606:laminin-1
GO:0030334:regulation of cell migration
GO:0030155:regulation of cell adhesion
GO:0016459:myosin
GO:0045995:regulation of embryonic development
GO:0005102:receptor binding
GO:0003774:motor activity

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.645	3.7e-102	0.614	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.605	1.11e-89	0.566	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.485	4.27e-83	0.538	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

262841_at : AT1G14810
GO:0051287:NAD binding
GO:0006520:amino acid metabolism
GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0005739:mitochondrion
GO:0006526:arginine biosynthesis
GO:0009088:threonine biosynthesis
GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity
GO:0009086:methionine biosynthesis
GO:0004073:aspartate-semialdehyde dehydrogenase activity

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.835	5.38e-83	0.537	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	0.716	7.33e-101	0.609	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.829	4.68e-87	0.555	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

247235_at : AT5G64580
GO:0005737:cytoplasm
GO:0016787:hydrolase activity
GO:0009378:Holliday junction helicase activity
GO:0004222:metalloendopeptidase activity
GO:0005515:protein binding
GO:0006281:DNA repair
GO:0005634:nucleus
GO:0016020:membrane
GO:0030163:protein catabolism
GO:0006310:DNA recombination
GO:0016887:ATPase activity
GO:0003677:DNA binding
GO:0015031:protein transport
GO:0006508:proteolysis and peptidolysis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.52	5.26e-83	0.537	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.577	2.53e-84	0.543	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.486	1.82e-95	0.589	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

257702_at : AT3G12670
GO:0005737:cytoplasm
GO:0006221:pyrimidine nucleotide biosynthesis
GO:0009218:pyrimidine ribonucleotide metabolism
GO:0016163:nitrogenase activity
GO:0009399:nitrogen fixation
GO:0003824:catalytic activity
GO:0003883:CTP synthase activity
GO:0012505:endomembrane system
GO:0016763:transferase activity, transferring pentosyl groups
GO:0000105:histidine biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.8	1.14e-89	0.566	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.783	4.26e-90	0.567	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.626	7.01e-83	0.537	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

264177_at : AT1G02150
GO:0005737:cytoplasm
GO:0008119:thiopurine S-methyltransferase activity
GO:0008152:metabolism
GO:0005509:calcium ion binding
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.432	3.08e-100	0.607	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.459	1.09e-88	0.562	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.473	8e-83	0.536	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

267018_at : AT2G39140
GO:0004730:pseudouridylate synthase activity
GO:0009982:pseudouridine synthase activity
GO:0003723:RNA binding
GO:0006396:RNA processing
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.629	2.99e-101	0.611	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.701	5.7e-104	0.621	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.527	9.24e-83	0.536	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

263298_at : AT2G15290
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.606	1.85e-106	0.63	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.617	1.28e-82	0.535	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
260286_at AT1G80600	0.692	1.87e-99	0.604	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

262754_at : AT1G16350
GO:0006177:GMP biosynthesis
GO:0003938:IMP dehydrogenase activity
GO:0003920:GMP reductase activity
GO:0006568:tryptophan metabolism
GO:0003824:catalytic activity
GO:0009117:nucleotide metabolism
GO:0006118:electron transport
GO:0008152:metabolism
GO:0000105:histidine biosynthesis
GO:0004834:tryptophan synthase activity
GO:0008372:cellular component unknown
GO:0016491:oxidoreductase activity

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.635	5.86e-91	0.571	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.601	1.82e-82	0.535	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.449	1.83e-88	0.561	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

250973_at : AT5G02870
GO:0015934:large ribosomal subunit
GO:0005840:ribosome
GO:0003711:transcriptional elongation regulator activity
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006355:regulation of transcription, DNA-dependent
GO:0006412:protein biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.05	1.16e-116	0.664	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.991	1.74e-103	0.619	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.672	1.92e-82	0.535	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

267174_at : AT2G37600
GO:0003735:structural constituent of ribosome
GO:0005840:ribosome
GO:0005622:intracellular
GO:0008305:integrin complex
GO:0007160:cell-matrix adhesion
GO:0007155:cell adhesion
GO:0006412:protein biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.636	1.1e-102	0.616	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.627	5.92e-106	0.628	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.423	3.29e-82	0.534	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

248797_at : AT5G47210
GO:0000004:biological process unknown
GO:0003723:RNA binding
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.823	1.43e-128	0.7	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.742	3.13e-97	0.596	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.512	5.68e-82	0.533	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

267562_at : AT2G39670
GO:0003824:catalytic activity
GO:0005506:iron ion binding
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.412	4.84e-92	0.575	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.449	5.35e-88	0.559	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.354	7.08e-82	0.532	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

246575_at : AT1G31660
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.806	9.82e-90	0.566	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.763	9.34e-82	0.532	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.646	4.76e-89	0.563	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

252904_at : AT4G39620
GO:0009793:embryonic development (sensu Magnoliophyta)
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.499	2.65e-95	0.588	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.525	3.44e-82	0.534	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.424	1.02e-81	0.531	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

256106_at : AT1G16870
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.08	1.38e-81	0.531	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	1.09	1.36e-88	0.561	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.789	8.99e-87	0.553	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

250461_at : AT5G10010
GO:0016151:nickel ion binding
GO:0003700:transcription factor activity
GO:0005634:nucleus
GO:0006461:protein complex assembly
GO:0045449:regulation of transcription
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.9	5.17e-90	0.567	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.885	8.38e-92	0.574	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
257680_at AT3G20330	0.699	2.07e-81	0.53	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

264069_at : AT2G28000
GO:0006457:protein folding
GO:0016832:aldehyde-lyase activity
GO:0015238:drug transporter activity
GO:0009658:chloroplast organization and biogenesis
GO:0009790:embryonic development
GO:0005739:mitochondrion
GO:0005524:ATP binding
GO:0005515:protein binding
GO:0009507:chloroplast
GO:0008831:dTDP-4-dehydrorhamnose reductase activity
GO:0008270:zinc ion binding

probe set,gene	slope	pvalue	rsquared	annotations
265965_at AT2G37500	0.325	3.46e-81	0.529	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	0.414	1.44e-88	0.561	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.529	6.47e-104	0.621	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

263902_at : AT2G36230
GO:0005737:cytoplasm
GO:0009382:imidazoleglycerol phosphate synthase complex
GO:0004640:phosphoribosylanthranilate isomerase activity
GO:0000162:tryptophan biosynthesis
GO:0005739:mitochondrion
GO:0003949:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
GO:0000107:imidazoleglycerol phosphate synthase activity
GO:0000105:histidine biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.603	3.97e-86	0.551	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
265965_at AT2G37500	0.575	3.25e-106	0.629	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
261122_at AT1G75330	0.578	8.86e-81	0.527	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

251993_at : AT3G52960
GO:0016209:antioxidant activity
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.501	1.38e-121	0.679	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.488	8.97e-81	0.527	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
265965_at AT2G37500	0.408	1.74e-89	0.565	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast

249483_at : AT5G38895
GO:0000151:ubiquitin ligase complex
GO:0016567:protein ubiquitination
GO:0012505:endomembrane system
GO:0005515:protein binding
GO:0004842:ubiquitin-protein ligase activity
GO:0008270:zinc ion binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	-0.819	6.49e-95	0.587	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
251639_at AT3G57560	-0.657	1.01e-93	0.582	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	-0.759	9.61e-81	0.527	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

250529_at : AT5G08610
GO:0008026:ATP-dependent helicase activity
GO:0004386:helicase activity
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
265965_at AT2G37500	0.295	9.91e-83	0.536	step: glutamate N-acetyltransferase GO:0006526:arginine biosynthesis GO:0004358:glutamate N-acetyltransferase activity GO:0009507:chloroplast
251639_at AT3G57560	0.362	9.45e-81	0.527	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.441	1.56e-81	0.531	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

263882_at : AT2G21790
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.551	6.1e-132	0.709	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.549	9.93e-143	0.738	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

251830_at : AT3G55010
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.788	5.49e-148	0.75	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.743	2.37e-128	0.699	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

262880_at : AT1G64880
GO:0015935:small ribosomal subunit
GO:0016020:membrane
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.702	4.22e-127	0.696	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.683	2.27e-125	0.691	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

252442_at : AT3G46940
GO:0046080:dUTP metabolism
GO:0016787:hydrolase activity
GO:0004170:dUTP diphosphatase activity
GO:0008372:cellular component unknown
GO:0009394:2'-deoxyribonucleotide metabolism

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.538	6.77e-125	0.689	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.528	8.4e-127	0.695	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

247606_at : AT5G61000
GO:0005634:nucleus
GO:0006260:DNA replication
GO:0003676:nucleic acid binding
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.781	4.39e-128	0.698	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.751	5.55e-121	0.677	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

261080_at : AT1G07370
GO:0005737:cytoplasm
GO:0030337:DNA polymerase processivity factor activity
GO:0005730:nucleolus
GO:0005634:nucleus
GO:0000074:regulation of progression through cell cycle
GO:0006275:regulation of DNA replication
GO:0005660:delta-DNA polymerase cofactor complex
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.558	7.9e-130	0.703	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.528	4.41e-115	0.659	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

248891_at : AT5G46280
GO:0008094:DNA-dependent ATPase activity
GO:0005634:nucleus
GO:0006270:DNA replication initiation
GO:0005524:ATP binding
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.507	7.73e-113	0.651	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.512	1.21e-126	0.694	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

259096_at : AT3G04840
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005843:cytosolic small ribosomal subunit (sensu Eukaryota)

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.979	8.57e-113	0.651	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.968	1.08e-117	0.667	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

246265_at : AT1G31860
GO:0000105:histidine biosynthesis
GO:0004635:phosphoribosyl-AMP cyclohydrolase activity
GO:0005739:mitochondrion
GO:0004636:phosphoribosyl-ATP diphosphatase activity

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.783	2.29e-110	0.643	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.778	3.1e-117	0.666	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

249276_at : AT5G41880
GO:0006260:DNA replication
GO:0003896:DNA primase activity
GO:0008372:cellular component unknown
GO:0006269:DNA replication, synthesis of RNA primer

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.72	5.98e-106	0.628	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.752	4.27e-135	0.718	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

263119_at : AT1G03110
GO:0000004:biological process unknown
GO:0008372:cellular component unknown
GO:0000166:nucleotide binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.917	4.65e-113	0.652	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.875	3.31e-104	0.622	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

254444_at : AT4G20960
GO:0016787:hydrolase activity
GO:0009231:riboflavin biosynthesis
GO:0008703:5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0008270:zinc ion binding
GO:0008835:diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.576	3.09e-102	0.614	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.645	4.56e-107	0.632	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

258410_at : AT3G16780
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.627	5.8e-118	0.668	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.587	4.04e-102	0.614	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

263612_at : AT2G16440
GO:0008094:DNA-dependent ATPase activity
GO:0000160:two-component signal transduction system (phosphorelay)
GO:0005634:nucleus
GO:0006270:DNA replication initiation
GO:0006355:regulation of transcription, DNA-dependent
GO:0003677:DNA binding
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.471	1.04e-101	0.613	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.482	3.27e-119	0.672	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

265097_at : AT1G04020
GO:0006281:DNA repair
GO:0005634:nucleus
GO:0003713:transcription coactivator activity
GO:0000151:ubiquitin ligase complex
GO:0005622:intracellular
GO:0016567:protein ubiquitination
GO:0008270:zinc ion binding
GO:0004842:ubiquitin-protein ligase activity
GO:0003684:damaged DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.82	5.67e-101	0.61	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.823	1.86e-110	0.643	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

256343_at : AT1G72090
GO:0003824:catalytic activity
GO:0005506:iron ion binding
GO:0006725:aromatic compound metabolism
GO:0016853:isomerase activity
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
250403_at AT5G10920	0.836	2.65e-102	0.615	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
261122_at AT1G75330	0.608	6.35e-101	0.61	step: ornithine carbamoyltransferase GO:0006207:'de novo' pyrimidine base biosynthesis GO:0006520:amino acid metabolism GO:0016743:carboxyl- and carbamoyltransferase activity GO:0009348:ornithine carbamoyltransferase complex GO:0009507:chloroplast GO:0016597:amino acid binding GO:0004585:ornithine carbamoyltransferase activity GO:0004070:aspartate carbamoyltransferase activity

263372_at : AT2G20450
GO:0003735:structural constituent of ribosome
GO:0007046:ribosome biogenesis
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.761	1.34e-116	0.664	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.712	1.02e-100	0.609	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

250222_at : AT5G14050
GO:0000004:biological process unknown
GO:0008372:cellular component unknown
GO:0000166:nucleotide binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.742	1.21e-107	0.634	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.709	7.53e-100	0.606	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

247119_at : AT5G65900
GO:0006310:DNA recombination
GO:0009432:SOS response
GO:0008026:ATP-dependent helicase activity
GO:0004003:ATP-dependent DNA helicase activity
GO:0004386:helicase activity
GO:0008372:cellular component unknown
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.935	7.45e-102	0.613	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.908	7.84e-100	0.606	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

267474_at : AT2G02740
GO:0000004:biological process unknown
GO:0003677:DNA binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251639_at AT3G57560	0.717	3.15e-99	0.603	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast
250403_at AT5G10920	0.936	2.76e-128	0.699	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

252941_at : AT4G39280
GO:0005737:cytoplasm
GO:0004826:phenylalanine-tRNA ligase activity
GO:0004812:tRNA ligase activity
GO:0006432:phenylalanyl-tRNA aminoacylation
GO:0006418:tRNA aminoacylation for protein translation
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.37	9.31e-99	0.602	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	1.43	7.94e-125	0.689	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

257907_at : AT3G25470
GO:0004730:pseudouridylate synthase activity
GO:0008757:S-adenosylmethionine-dependent methyltransferase activity
GO:0019836:hemolysis
GO:0003723:RNA binding
GO:0005739:mitochondrion

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.721	3.21e-100	0.607	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.793	1.31e-98	0.601	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

258715_at : AT3G09630
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.07	1.77e-98	0.6	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	1.06	1.15e-104	0.623	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

258475_at : AT3G02660
GO:0004420:hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0006437:tyrosyl-tRNA aminoacylation
GO:0004812:tRNA ligase activity
GO:0009058:biosynthesis
GO:0003723:RNA binding
GO:0006418:tRNA aminoacylation for protein translation
GO:0004831:tyrosine-tRNA ligase activity
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.632	3.72e-111	0.646	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.673	2.04e-98	0.6	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

256675_at : AT3G52170
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.559	5.01e-98	0.599	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.616	9.3e-153	0.762	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

254981_at : AT4G10480
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.801	1.42e-121	0.679	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.735	5.4e-98	0.599	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

249836_at : AT5G23420
GO:0003700:transcription factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0030001:metal ion transport
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.548	6.37e-98	0.598	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.548	7.4e-106	0.628	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

253384_at : AT4G32915
GO:0017068:glutamyl-tRNA(Gln) amidotransferase activity
GO:0006450:regulation of translational fidelity
GO:0006412:protein biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.637	6.39e-98	0.598	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.729	4.39e-110	0.642	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

253972_at : AT4G26500
GO:0000004:biological process unknown
GO:0030528:transcription regulator activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.816	2.02e-97	0.596	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
260286_at AT1G80600	0.962	6.61e-101	0.61	step: acetylornithine transaminase GO:0005737:cytoplasm GO:0030170:pyridoxal phosphate binding GO:0009448:gamma-aminobutyric acid metabolism GO:0009102:biotin biosynthesis GO:0042286:glutamate-1-semialdehyde 2,1-aminomutase activity GO:0004015:adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO:0006526:arginine biosynthesis GO:0004400:histidinol-phosphate transaminase activity GO:0006779:porphyrin biosynthesis GO:0008483:transaminase activity GO:0009058:biosynthesis GO:0006525:arginine metabolism GO:0019555:glutamate catabolism to ornithine GO:0000105:histidine biosynthesis GO:0009507:chloroplast GO:0003867:4-aminobutyrate transaminase activity GO:0003992:acetylornithine transaminase activity

260793_at : AT1G06190
GO:0008017:microtubule binding
GO:0003677:DNA binding
GO:0016055:Wnt receptor signaling pathway
GO:0005515:protein binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.388	2.63e-97	0.596	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.439	2.91e-105	0.625	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

254004_at : AT4G26300
GO:0004825:methionine-tRNA ligase activity
GO:0004812:tRNA ligase activity
GO:0006431:methionyl-tRNA aminoacylation
GO:0004814:arginine-tRNA ligase activity
GO:0006420:arginyl-tRNA aminoacylation
GO:0008372:cellular component unknown
GO:0006418:tRNA aminoacylation for protein translation
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.27	2.68e-97	0.596	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	1.35	1.66e-129	0.702	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

257856_at : AT3G12930
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.385	3.26e-114	0.656	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.405	3.92e-97	0.595	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

264350_at : AT1G11870
GO:0006434:seryl-tRNA aminoacylation
GO:0004812:tRNA ligase activity
GO:0004828:serine-tRNA ligase activity
GO:0006464:protein modification
GO:0005739:mitochondrion
GO:0006418:tRNA aminoacylation for protein translation
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.655	2.39e-100	0.607	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.716	7.15e-97	0.594	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

253635_at : AT4G30620
GO:0000004:biological process unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.443	8.54e-109	0.638	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.472	1.17e-96	0.593	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

264327_at : AT1G04170
GO:0005737:cytoplasm
GO:0005840:ribosome
GO:0008135:translation factor activity, nucleic acid binding
GO:0005622:intracellular
GO:0001514:selenocysteine incorporation
GO:0006414:translational elongation
GO:0006412:protein biosynthesis
GO:0003743:translation initiation factor activity

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.26	5.77e-119	0.671	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	1.16	2.57e-96	0.592	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

251172_at : AT3G63190
GO:0005554:molecular function unknown
GO:0006412:protein biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
266704_at AT2G19940	0.373	2.71e-118	0.669	step: dihydrodipicolinate reductase GO:0005737:cytoplasm GO:0008152:metabolism GO:0051287:NAD binding GO:0006520:amino acid metabolism GO:0016620:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0006526:arginine biosynthesis GO:0009089:lysine biosynthesis via diaminopimelate GO:0009088:threonine biosynthesis GO:0008839:dihydrodipicolinate reductase activity GO:0003942:N-acetyl-gamma-glutamyl-phosphate reductase activity GO:0009086:methionine biosynthesis GO:0004073:aspartate-semialdehyde dehydrogenase activity GO:0006118:electron transport GO:0016491:oxidoreductase activity
251639_at AT3G57560	0.388	2.63e-96	0.592	step: acetylglutamate kinase GO:0005737:cytoplasm GO:0008652:amino acid biosynthesis GO:0008804:carbamate kinase activity GO:0004042:amino-acid N-acetyltransferase activity GO:0006561:proline biosynthesis GO:0006526:arginine biosynthesis GO:0006525:arginine metabolism GO:0004349:glutamate 5-kinase activity GO:0003991:acetylglutamate kinase activity GO:0009507:chloroplast

258900_at : AT3G05590
GO:0003735:structural constituent of ribosome
GO:0015934:large ribosomal subunit
GO:0006412:protein biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	1.01	3.68e-96	0.592	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.997	2e-99	0.604	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

100

266057_at : AT2G40660
GO:0005737:cytoplasm
GO:0004825:methionine-tRNA ligase activity
GO:0004826:phenylalanine-tRNA ligase activity
GO:0000049:tRNA binding
GO:0006432:phenylalanyl-tRNA aminoacylation
GO:0006418:tRNA aminoacylation for protein translation
GO:0006412:protein biosynthesis
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.975	7.41e-96	0.59	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast
250403_at AT5G10920	0.988	3.36e-108	0.636	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

101

253817_at : AT4G28310
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
254134_at AT4G24830	0.722	1.61e-101	0.612	step: argininosuccinate synthase GO:0004055:argininosuccinate synthase activity GO:0006526:arginine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast