PCL results for AraCyc pathway: de novo biosynthesis of purine nucleotides II

KEY: Each row represents a single gene that was identified by PLC (pathway-level co-expression) as being co-expressed with two or more genes in this pathway. Column 2 lists probe sets/genes that are co-expressed with annotated pathway members in column 3. Here, co-expression is defined as a regression p value less than 1e-120. If a gene in the first column is shaded blue, then it is already known to be a member of the pathway.

rank

probe set:gene id

co-expressed with

256862_at : AT3G23940
GO:0004160:dihydroxy-acid dehydratase activity
GO:0009255:Entner-Doudoroff pathway
GO:0009099:valine biosynthesis
GO:0003824:catalytic activity
GO:0008152:metabolism
GO:0004456:phosphogluconate dehydratase activity
GO:0009097:isoleucine biosynthesis
GO:0009507:chloroplast
GO:0009082:branched chain family amino acid biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
251599_at AT3G57610	0.505	1.66e-132	0.711	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0006164:purine nucleotide biosynthesis GO:0005525:GTP binding GO:0009152:purine ribonucleotide biosynthesis GO:0009507:chloroplast
250403_at AT5G10920	0.717	1.09e-164	0.787	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast
251830_at AT3G55010	0.769	1e-133	0.714	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
267421_at AT2G35040	0.755	4.34e-154	0.765	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
262754_at AT1G16350	0.811	1.38e-121	0.679	step: IMP dehydrogenase GO:0006177:GMP biosynthesis GO:0003938:IMP dehydrogenase activity GO:0003920:GMP reductase activity GO:0006568:tryptophan metabolism GO:0003824:catalytic activity GO:0009117:nucleotide metabolism GO:0006118:electron transport GO:0008152:metabolism GO:0000105:histidine biosynthesis GO:0004834:tryptophan synthase activity GO:0008372:cellular component unknown GO:0016491:oxidoreductase activity
258243_at AT3G27740	0.491	2.3e-132	0.71	step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006207:'de novo' pyrimidine base biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006526:arginine biosynthesis GO:0004049:anthranilate synthase activity GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0006807:nitrogen compound metabolism GO:0004086:carbamoyl-phosphate synthase activity GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0006177:GMP biosynthesis GO:0000105:histidine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

253921_at : AT4G26900
GO:0000107:imidazoleglycerol phosphate synthase activity
GO:0000105:histidine biosynthesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.999	6.1e-128	0.698	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
267421_at AT2G35040	0.971	2.06e-140	0.732	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
250403_at AT5G10920	0.911	1.53e-141	0.735	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

267421_at : AT2G35040
GO:0003937:IMP cyclohydrolase activity
GO:0006164:purine nucleotide biosynthesis
GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.878	1.8e-126	0.694	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
251599_at AT3G57610	0.578	3.65e-126	0.693	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0006164:purine nucleotide biosynthesis GO:0005525:GTP binding GO:0009152:purine ribonucleotide biosynthesis GO:0009507:chloroplast
250403_at AT5G10920	0.797	1.88e-137	0.724	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

250403_at : AT5G10920
GO:0004018:adenylosuccinate lyase activity
GO:0009152:purine ribonucleotide biosynthesis
GO:0004056:argininosuccinate lyase activity
GO:0045239:tricarboxylic acid cycle enzyme complex
GO:0008797:aspartate ammonia-lyase activity
GO:0006526:arginine biosynthesis
GO:0003824:catalytic activity
GO:0006106:fumarate metabolism
GO:0006531:aspartate metabolism
GO:0004333:fumarate hydratase activity
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.941	2.37e-128	0.699	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
267421_at AT2G35040	0.909	1.88e-137	0.724	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
258243_at AT3G27740	0.599	7.04e-126	0.692	step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006207:'de novo' pyrimidine base biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006526:arginine biosynthesis GO:0004049:anthranilate synthase activity GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0006807:nitrogen compound metabolism GO:0004086:carbamoyl-phosphate synthase activity GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0006177:GMP biosynthesis GO:0000105:histidine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

264118_at : AT1G79140
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.662	3.64e-121	0.678	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
253213_at AT4G34910	0.477	1.74e-124	0.688	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0016151:nickel ion binding GO:0008026:ATP-dependent helicase activity GO:0006461:protein complex assembly GO:0004386:helicase activity GO:0008372:cellular component unknown GO:0003676:nucleic acid binding GO:0006164:purine nucleotide biosynthesis GO:0006259:DNA metabolism GO:0005524:ATP binding GO:0005525:GTP binding
260294_at AT1G63660	0.545	3.11e-121	0.678	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding

263882_at : AT2G21790
GO:0005971:ribonucleoside-diphosphate reductase complex
GO:0004748:ribonucleoside-diphosphate reductase activity
GO:0006260:DNA replication

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.623	2.67e-147	0.749	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.549	9.93e-143	0.738	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

260250_at : AT1G74260
GO:0005737:cytoplasm
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004642:phosphoribosylformylglycinamidine synthase activity
GO:0005739:mitochondrion
GO:0005198:structural molecule activity
GO:0009113:purine base biosynthesis
GO:0003824:catalytic activity
GO:0006189:'de novo' IMP biosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
267421_at AT2G35040	0.912	9.18e-141	0.733	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
251599_at AT3G57610	0.638	4.01e-145	0.744	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0006164:purine nucleotide biosynthesis GO:0005525:GTP binding GO:0009152:purine ribonucleotide biosynthesis GO:0009507:chloroplast

256675_at : AT3G52170
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.678	9.25e-140	0.73	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.616	9.3e-153	0.762	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

256797_at : AT3G18600
GO:0006310:DNA recombination
GO:0009432:SOS response
GO:0008026:ATP-dependent helicase activity
GO:0004003:ATP-dependent DNA helicase activity
GO:0004386:helicase activity
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0005622:intracellular
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.755	8.98e-144	0.74	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
260294_at AT1G63660	0.617	3.23e-139	0.729	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding

256288_at : AT3G12270
GO:0005737:cytoplasm
GO:0006479:protein amino acid methylation
GO:0046406:magnesium protoporphyrin IX methyltransferase activity
GO:0015995:chlorophyll biosynthesis
GO:0008757:S-adenosylmethionine-dependent methyltransferase activity
GO:0005634:nucleus
GO:0008276:protein methyltransferase activity
GO:0008270:zinc ion binding
GO:0003676:nucleic acid binding
GO:0008425:2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity
GO:0008168:methyltransferase activity
GO:0006744:ubiquinone biosynthesis
GO:0015979:photosynthesis

probe set,gene	slope	pvalue	rsquared	annotations
260294_at AT1G63660	0.829	4.79e-168	0.794	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding
253213_at AT4G34910	0.686	1.26e-135	0.719	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0016151:nickel ion binding GO:0008026:ATP-dependent helicase activity GO:0006461:protein complex assembly GO:0004386:helicase activity GO:0008372:cellular component unknown GO:0003676:nucleic acid binding GO:0006164:purine nucleotide biosynthesis GO:0006259:DNA metabolism GO:0005524:ATP binding GO:0005525:GTP binding

260157_at : AT1G52930
GO:0016151:nickel ion binding
GO:0006464:protein modification
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.691	1.33e-133	0.714	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
260294_at AT1G63660	0.573	4.77e-137	0.723	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding

262584_at : AT1G15440
GO:0000004:biological process unknown
GO:0008372:cellular component unknown
GO:0000166:nucleotide binding

probe set,gene	slope	pvalue	rsquared	annotations
260294_at AT1G63660	0.736	5.89e-145	0.743	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding
253213_at AT4G34910	0.624	1.65e-131	0.708	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0016151:nickel ion binding GO:0008026:ATP-dependent helicase activity GO:0006461:protein complex assembly GO:0004386:helicase activity GO:0008372:cellular component unknown GO:0003676:nucleic acid binding GO:0006164:purine nucleotide biosynthesis GO:0006259:DNA metabolism GO:0005524:ATP binding GO:0005525:GTP binding

249276_at : AT5G41880
GO:0006260:DNA replication
GO:0003896:DNA primase activity
GO:0008372:cellular component unknown
GO:0006269:DNA replication, synthesis of RNA primer

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.839	9.29e-131	0.706	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.752	4.27e-135	0.718	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

249901_at : AT5G22650
GO:0004407:histone deacetylase activity
GO:0005634:nucleus
GO:0016481:negative regulation of transcription

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.95	4.89e-135	0.718	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
260294_at AT1G63660	0.776	2.67e-130	0.705	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding

258966_at : AT3G10690
GO:0006265:DNA topological change
GO:0005739:mitochondrion
GO:0003824:catalytic activity
GO:0003916:DNA topoisomerase activity
GO:0003677:DNA binding
GO:0006259:DNA metabolism
GO:0006268:DNA unwinding
GO:0003918:DNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
267421_at AT2G35040	0.737	4.53e-127	0.696	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
250403_at AT5G10920	0.721	2.25e-152	0.761	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

252442_at : AT3G46940
GO:0046080:dUTP metabolism
GO:0016787:hydrolase activity
GO:0004170:dUTP diphosphatase activity
GO:0008372:cellular component unknown
GO:0009394:2'-deoxyribonucleotide metabolism

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.603	2.17e-134	0.716	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.528	8.4e-127	0.695	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

248891_at : AT5G46280
GO:0008094:DNA-dependent ATPase activity
GO:0005634:nucleus
GO:0006270:DNA replication initiation
GO:0005524:ATP binding
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.606	6.68e-156	0.769	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.512	1.21e-126	0.694	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

251830_at : AT3G55010
GO:0005737:cytoplasm
GO:0009113:purine base biosynthesis
GO:0009228:thiamin biosynthesis
GO:0009030:thiamin phosphate kinase activity
GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004860:protein kinase inhibitor activity
GO:0003824:catalytic activity
GO:0005576:extracellular region
GO:0006189:'de novo' IMP biosynthesis
GO:0009405:pathogenesis
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
267421_at AT2G35040	0.791	1.8e-126	0.694	step: IMP cyclohydrolase GO:0003937:IMP cyclohydrolase activity GO:0006164:purine nucleotide biosynthesis GO:0004643:phosphoribosylaminoimidazolecarboxamide formyltransferase activity GO:0009507:chloroplast
250403_at AT5G10920	0.743	2.37e-128	0.699	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

258715_at : AT3G09630
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome
GO:0005622:intracellular

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	1.27	7.49e-130	0.703	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
258243_at AT3G27740	0.806	1.99e-126	0.694	step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006207:'de novo' pyrimidine base biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006526:arginine biosynthesis GO:0004049:anthranilate synthase activity GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0006807:nitrogen compound metabolism GO:0004086:carbamoyl-phosphate synthase activity GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0006177:GMP biosynthesis GO:0000105:histidine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

247608_at : AT5G60990
GO:0008026:ATP-dependent helicase activity
GO:0000074:regulation of progression through cell cycle
GO:0004386:helicase activity
GO:0008372:cellular component unknown
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	1.09	1.67e-129	0.702	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
258243_at AT3G27740	0.695	2.89e-126	0.693	step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006207:'de novo' pyrimidine base biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006526:arginine biosynthesis GO:0004049:anthranilate synthase activity GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0006807:nitrogen compound metabolism GO:0004086:carbamoyl-phosphate synthase activity GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0006177:GMP biosynthesis GO:0000105:histidine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

254134_at : AT4G24830
GO:0004055:argininosuccinate synthase activity
GO:0006526:arginine biosynthesis
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.952	5.49e-148	0.75	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
258243_at AT3G27740	0.586	4.65e-126	0.693	step: GMP synthase (glutamine-hydrolyzing)//carbamoyl-phosphate synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006207:'de novo' pyrimidine base biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006526:arginine biosynthesis GO:0004049:anthranilate synthase activity GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0006807:nitrogen compound metabolism GO:0004086:carbamoyl-phosphate synthase activity GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0004088:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity GO:0006177:GMP biosynthesis GO:0000105:histidine biosynthesis GO:0005524:ATP binding GO:0009507:chloroplast

257652_at : AT3G16810
GO:0016071:mRNA metabolism
GO:0003723:RNA binding
GO:0008372:cellular component unknown
GO:0003677:DNA binding

probe set,gene	slope	pvalue	rsquared	annotations
260294_at AT1G63660	0.836	1.31e-125	0.691	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding
253213_at AT4G34910	0.759	9.9e-150	0.755	step: adenylosuccinate synthase GO:0004019:adenylosuccinate synthase activity GO:0016151:nickel ion binding GO:0008026:ATP-dependent helicase activity GO:0006461:protein complex assembly GO:0004386:helicase activity GO:0008372:cellular component unknown GO:0003676:nucleic acid binding GO:0006164:purine nucleotide biosynthesis GO:0006259:DNA metabolism GO:0005524:ATP binding GO:0005525:GTP binding

262880_at : AT1G64880
GO:0015935:small ribosomal subunit
GO:0016020:membrane
GO:0005622:intracellular
GO:0003735:structural constituent of ribosome
GO:0006412:protein biosynthesis
GO:0005840:ribosome

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.819	2.94e-162	0.782	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.683	2.27e-125	0.691	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

252941_at : AT4G39280
GO:0005737:cytoplasm
GO:0004826:phenylalanine-tRNA ligase activity
GO:0004812:tRNA ligase activity
GO:0006432:phenylalanyl-tRNA aminoacylation
GO:0006418:tRNA aminoacylation for protein translation
GO:0005524:ATP binding

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	1.69	9.27e-150	0.755	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	1.43	7.94e-125	0.689	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

246575_at : AT1G31660
GO:0000004:biological process unknown
GO:0005554:molecular function unknown
GO:0008372:cellular component unknown

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.977	2.37e-124	0.688	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
260294_at AT1G63660	0.828	8.91e-139	0.728	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding

261614_at : AT1G49760
GO:0005634:nucleus
GO:0009613:response to pest, pathogen or parasite
GO:0012505:endomembrane system
GO:0003723:RNA binding
GO:0003743:translation initiation factor activity
GO:0006397:mRNA processing

probe set,gene	slope	pvalue	rsquared	annotations
251830_at AT3G55010	0.847	1.09e-123	0.686	step: catalytic GO:0005737:cytoplasm GO:0009113:purine base biosynthesis GO:0009228:thiamin biosynthesis GO:0009030:thiamin phosphate kinase activity GO:0004641:phosphoribosylformylglycinamidine cyclo-ligase activity GO:0004860:protein kinase inhibitor activity GO:0003824:catalytic activity GO:0005576:extracellular region GO:0006189:'de novo' IMP biosynthesis GO:0009405:pathogenesis GO:0009507:chloroplast
250403_at AT5G10920	0.752	1.06e-123	0.686	step: adenylosuccinate lyase GO:0004018:adenylosuccinate lyase activity GO:0009152:purine ribonucleotide biosynthesis GO:0004056:argininosuccinate lyase activity GO:0045239:tricarboxylic acid cycle enzyme complex GO:0008797:aspartate ammonia-lyase activity GO:0006526:arginine biosynthesis GO:0003824:catalytic activity GO:0006106:fumarate metabolism GO:0006531:aspartate metabolism GO:0004333:fumarate hydratase activity GO:0009507:chloroplast

266076_at : AT2G40700
GO:0008026:ATP-dependent helicase activity
GO:0004386:helicase activity
GO:0003676:nucleic acid binding
GO:0006259:DNA metabolism
GO:0005524:ATP binding
GO:0009507:chloroplast

probe set,gene	slope	pvalue	rsquared	annotations
260294_at AT1G63660	0.912	3.55e-123	0.684	step: GMP synthase (glutamine-hydrolyzing) GO:0005737:cytoplasm GO:0006177:GMP biosynthesis GO:0009435:NAD biosynthesis GO:0003922:GMP synthase (glutamine-hydrolyzing) activity GO:0006164:purine nucleotide biosynthesis GO:0004049:anthranilate synthase activity GO:0009113:purine base biosynthesis GO:0003824:catalytic activity GO:0009058:biosynthesis GO:0009117:nucleotide metabolism GO:0008152:metabolism GO:0016763:transferase activity, transferring pentosyl groups GO:0000105:histidine biosynthesis GO:0003952:NAD+ synthase (glutamine-hydrolyzing) activity GO:0005524:ATP binding
253213_at